GgaINT0076235 @ galGal3
Intron Retention
Gene
ENSGALG00000012044 | Q90716_CHICK
Description
NA
Coordinates
chr4:58366013-58369176:-
Coord C1 exon
chr4:58369078-58369176
Coord A exon
chr4:58366112-58369077
Coord C2 exon
chr4:58366013-58366111
Length
2966 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
CCTTCTCTTTTTCTCTTCAGAAT
3' ss Score
11.79
Exon sequences
Seq C1 exon
AATGGGTACACTCCTCTCCACCAAGCTGCTCAACAAGGTCACACTCACATCATTAATGTCCTTCTCCAACATGGAGCTAAGCCCAATGCCATCACCACC
Seq A exon
GTAAGTGCAAAGTGCTTGTGGGAAGTGTTTCTCTGGGTAGTTCCTTCCTTTCTAGGGCTAAAGAGCAAACCTTTGATTTGGTGAAAGTTTTCTTCATACAGCTTGTTGTCAGATGTGTAAATGTAATGTTGCTTCTTCTCCTTTTCGTTATACTCATAGGGCAGTTCATTTATAACTTACTGCAGTAAGCTAAACGTGAGATGAAACTGCTTTCTGAGTTGCAGTGTCAGGATGGCTACACTGACTTGGTTTAATTGCCTTCTGCCTCAATACTTCTGTCTTAAAACTGATACATTGCAAGGATTTTTGTATAAAAGTTAAGGGCAAATCAGAACCTGGGTGTCTTTGAAGATCTGAATCCAAATTTCTATCCCTCTCTCCATTGGATCTCTGTTTCAGATTCTTAGTAAGTTCATTGATATTAACACAAAGACCATCAGTAACTTCTGGCACAGCTTTTTCTAATGCTAGCTAGGAATGCAGCTTTCCTGTTTCACGTTGATGTTGTTATTTGTCATCTCTACTTGGACAATGTTTAAAATGCATCCAGAAAGTTCAAAACACGTGTCCTTCCTCACGGTTGCCCAGGTTACCATTATTCCAACCGCATGGAATAATCTTGTGTGAAGTTATTCAAGATAGCAGTTTATGTGCCATGATCCAGAATCTACTTCAGTATCCAAGCCATGTATCCAAGACCCTAGTTTGTGCTCATTGTCAAGGAAGAAACCCTTGCAGTCAGCTTCTGGGACTGAAGGTTCTACTAGACACCTTCAGTGTTCAGTCTTCTAGTTTGGGCTGTCAAGCCAACTCTTACCCAAATCTAAGGAGTGTCTCAAGACTGTGTCTGCCCAGCAGTTTGCATGCCTTTTCAGTTACGAGCTCTGTTGTTCACGCATTGCTACTTTTAAGTTGATGTAAGAGAATTTGAACCTGCATCAGCTGACTAGGGGATATGGGAGTGGGATATGGAATATTAATGTGTAAGTGTCCAGTTTTGGGCCCCTCACTGTAAGAAAGACATCGAGGCCCTGGAGCATGTCCAGAGGAGGGCAACAAAGCTGGTGAGGGGTCTGGAGCACAGGCCTTATGAGGAGCAGCTGAAGGAGTTGGGATTGTTCAGTCCAGAGAAGAAGAGGCTTAGGGGGAGAGCTTATTGCTCTCTATAACTACCTGAAGGGAGATTGTAGTGAGCTGGGGGTCAGCCTCTTCTCTAGGGTGACTAGTGATAGGACTAGAGGGAATGGCTTCAAGCTGCACCAGAGAAGATTCAGACTGGATGTTAGGAAATACTACTTCTCTGAAAGGGTGGTCAGGCACTGGAATGGGCTGCCCAGAGAGGTGGTGGAGTCACCGACCCTGGAGGTGTTCAAAGAACGTTTGGATGTTGTGTTGAGGGACATGGTTTAGCGAGAACCATTGGTGAAGGGCAAATGGTTGGACTGGATGATCCTGTGGGTCTTTTCCAACCTTAGCGATTCTGTGATTCTAAGTGATGGTAACAATCATGTTATTTGTTCTGTGAAGATCTTTACCAGTTCATTTTGTGCTGCTAACTCAAAAATCCTATGTTGCTTTATTGGTGCTGAGATAGTCTAATGCACAGGAACTTAAATTGTAGATAACTCAATGTGGTACTGAGGGAGAGGAAAGACGTCAGGCTGATATTCTGCACACAGAGCAGTGGTATCGCAAGAGAAATTGCTCTGTACAATGGCTTTCCATGTCTCCCCTAGTAGGCCAGCATGTTGTTCTTTAATTCAAAATCATATGAAACAGTTCAGGGTGCAACTCTGTGTGAAGAATCATGGAATGTGCCCCTTCTCTCCACTCCCCAGGCTGGTTATTGGAGGTCCAAGGACTGCCACATCACATAGAGCCGTGTGACTTAGAGCAGCTTCTGCGGCTACTTAGGCTGAACTGGCTGCCAGTCATGTTGGTTAGTTCTGCTGGGAAGTTATGCCCTCAAAAGAGTTGTGGATGATTTAGCAAGTTTCTGATACTTAAAGTATTTTTATTTTTTTGTGTGAGAAGGTTCATTAATTTTGCTTCCTGTTGTGTCTGGCTTTTTTGCTATAGGGGAAATGCTTTTTGAAATAAATTACCGTGGTCTCTATTTTGAGGCAGTTTGAATAGAATTTTAAATGCAGTGAGACAGATGGCAATCTTAATTACTGTTCGTTTAAAATGAAAACTTATACGCTAGGTTCATAAATCTGAATTAATAATACTTATCTCTCAACCTATTTTAATGTTCCAAGTGATGAACTGGAGATAAATACGCCTAAACAATAACTGAATTACCATTTCAATGTCTGTTTACTGAATAGCATGTATCTAATGGGCATGTTGCAAATAAGTTTATTTAAATGGAAAACAGTTTCCAACCCCCAAGCCTTATATAGGTTTTCATGCTTGGTACATGATCAGCTTTTGTGTACTATTACAGCATGTAAAATTTTGTTGTAAAGTGGAATAGAATTGTATGTGGAGAATACAGCCGTAATCTTGTGTTCCTCAAAGAGGGACTGCACCAGATAAAGCTTTCGCAGTTTCAGCTGTAAGTGAAAGTCTAAGATTTCAAAATGTATATTTTTCAGAAGAGTCTCTCTCATATAAAGCAGTTTATGCAAAATGAAACACGGAATTCTGCAGACGAGACATTCTGCACGGTAGAATTTGACCATCTAAGGGTTAAACCATACCGCCTTTTTTAAAAAATTTAGACTAGCAGGCGGATGTATGTGTGTTGTGTTACCATGGCAACCAGAGCTATAGTCTTAAAGGGGTTGCAAAGACAGAGTCAGATGTAACAGTGAAAAAAAAAACAGTGATTTTCCTAGGCTGCGCCTTGTTTTGGATGGAAATGCTGGCTCATGCAGTGTTGAGAGTGATCTCATTGGTTCACATCACAATCCTCCCTCTCATTTCTCTCTCTCTCTCTTCCCTTCTCTTTTTCTCTTCAG
Seq C2 exon
AATGGTAACACTGCCTTAGCTATTGCTAGGCGTCTGGGATATATCTCAGTGGTCGATACGCTGAAGGTTGTAACGGAGGAGATTACTACCACCACAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012044:ENSGALT00000019661:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=NA C2=0.124
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PD(31.9=87.9)
A:
NA
C2:
PF127962=Ank_2=PD(42.2=81.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]