BtaINT0018334 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008288 | ANKRD26
Description
Bos taurus ankyrin repeat domain 26 (ANKRD26), mRNA. [Source:RefSeq mRNA;Acc:NM_001113767]
Coordinates
chr13:17912374-17913469:-
Coord C1 exon
chr13:17913175-17913469
Coord A exon
chr13:17912588-17913174
Coord C2 exon
chr13:17912374-17912587
Length
587 bp
Sequences
Splice sites
5' ss Seq
TTCATTTGT
5' ss Score
-15.66
3' ss Seq
TTAAAATTTGCCTTAGATACAAG
3' ss Score
-9.99
Exon sequences
Seq C1 exon
ATTGAGGATCTTACAGCAGAGCTGGAAGCTGCATCTTCAAAATGTCTGCACCTGGATGCAAAAAATCAAGTTCTTCGAGAGGAGTTATTATCTATGAAAGGAATGCAAAAGAAATGTGAAAAACTAGAGGAGAAGAAAAAGAAGTTGGAGCAAGAAGTAGTGCACCTCAGAAGTCATATAGAAATGAATATGATCGAACACAGTCAAGTAGAGCAGTATAAACGGGAAATTGAAGAAAGGGCGAGACAGGATCTCGTAGAGAAATTAAAGGAAGTCAACCTATGTTTGCAGGTTC
Seq A exon
ATTTGTTCGTCTGTCATGTGCTTGAATGCACCTCATTGTGAATTAGGTTGTGGATCTATACAGCTTCCGTGTTTCCTACTTCCCTGGAGCAGTTGGTTTGGTAGTTTTCTGGAAGGAAGGGGGCACTTCCTTCTCCCTTTAAATATTTCCGTTTCCATCACAGTTATCACCAAATTGACCTATGAGAATGATTCTCACTAGAGAATCCTTTCATTTATAAGACCAATTGGTATAAAACAAGACTACTAGAAGGAAAAGAAAATATTGTGGTTTAGAACTGGTACCATCCTCTTGAGTTATCTTTAAGTTGTCTTGTTCAGTTTTTAAAATTTTAAGTTGATCCTCTTGTTCTTTGAATTATCAGATTACATAAGCACCACTATAACAATAATTCTACTTGAATTTTATAATTCACATGTAATTCACCTCACATTGACGATAATTGTTTTAAACTTCTGCTCTTTTTTTTTTTTTAACCTTTAAAATTGCTTTCTGAATCACTGACTCAAAACTAAAGGGAGCAAATATCATTTTCCAGGTTAATGATTATTTTTTAAATATTATCTTTTAAAATTTGCCTTAGATAC
Seq C2 exon
AAGCAGCATCTCAGGAGAACTTAGAGCAGTTACAAGAGAAGAATAATGCTTCCATAAGAAGTCAGATGGAACTCAGAATTAAAGACTTGGAATCTGAACTCTCCAAGGTGAAAACTTTGCAAGAAGATTCTCATAAAGCAGAGTTGGAAAAATATAAGCAACTCTACCTAGTAGAACTAGAAGTTAGAAAGTCGTTGGAAGGTAAACTAGACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008288:ENSBTAT00000022622:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.181
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120013=DUF3496=PU(47.3=73.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCTGCACCTGGATGCAAAA
R:
TGGAGAGTTCAGATTCCAAGTCT
Band lengths:
358-945
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development