GgaINT0109019 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1BZ82]
Coordinates
chr1:24104700-24106129:+
Coord C1 exon
chr1:24104700-24104981
Coord A exon
chr1:24104982-24105893
Coord C2 exon
chr1:24105894-24106129
Length
912 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAT
5' ss Score
8.76
3' ss Seq
AATTGCATTATCTGCTTCAGACA
3' ss Score
4.81
Exon sequences
Seq C1 exon
GTTACTGAACTTTCTCAGCAGCTGGAGTTAGAGTCTAAAAAATGCATCCAGCTGGAAGCACAAAACCAGGATTTGCGAGAAGAGCTGTCTGCTCTGCGTGAGAACCATGAAAAACTGGAGAAGAGCAAGTGCCAGCTGAAGGAAGAGGTGGCAAACCTCAGACATCATTTGGAGGCTAATATGGTGAACCACAGCCAAATAGAACAGTACAAGAAAGAGATGGAAGAACGAGCAGGACAAGAAATCAGACAAAAACTACAAGAAGTCAATTTGTTTTTGCAG
Seq A exon
GTAAATGAATTTGTTGTGTATGTCTGTAGTTTTTATTATGTAACTTCTTTTTTTTTTTTTTCATTTTTTGTTTGTATTTTGATTCTTTGTGTGAGTACTTTACTTGTTAGGGGGAAGTTCTTTACCAGGAGAGTGGTGAGGTGCTGGAACGGGCTGCCCAGAGAGGTTGTAGATGCCCCGTCCCTGGAGGTGTTCAAGGCCAGGTTGGATGGGGCCCTGGGCAACCTGGTCTAGTAAATGGGGAGGTTGGTGCCCCTGCCCGGCAGGGGAATTGGAGATGCATGATCCTTGAGGTCCCTTCCAACCCAGGCCATTCTGTGATTCTATCTTTCCTGAAGGGAAGTGAGAAAATGGAAAATTGTTGGACAAAAGTGCTTTTGTGTGTGTAATTTGCCTGCAGGTGCCCAAGTTAATAGCATTCCCTTGACAGACTTCTGTTTTGCAGTTCTTAGAGGCTGTTGCTATCTGGTGATCTTTGTTATTGCTGTTCATCATATGAATATTGTAACTTAGAGATGGTTTGGCCATACATGCAGGTCATGTTTTATCACTGTACAGGATAAAATGCTCAGGGAAGAAGTCACTGAAGCTACCATGAGGCAGAAAGAGTGGGGATGGGATTCTCATAATTTCTTTGTAGAATCCTTTTTGTGTGCCCTGTCCTACAGACATAGAGTTGTTTTAGTAGCTGCTCTCGTAAGTAATACTGCTAGGAGCAGATCTTTATCTGGATGAAAACAGTTATTTAATGTATTGGTTCCAGGGTTCTGCCTTTATTGCTGATGGTAGCGAGGAGGTCCAGTTGTCTCAGCTGAGTAAAACTGGGCCCTTGAAATTGGTTATGTGCAACTGTCTGGGGAGAGGCAATTCACTTTTTCTTTGCAGTGGTTGAAATTGCATTATCTGCTTCAG
Seq C2 exon
ACACAGGCAGCCTCCCAGGACAGGTTAGAACAAATCAGAGCCAATCATCATGCCTCACTGAGAAACCAACTAAAGCACAGAATTAAAGATCTCGAATGTGAGTTGGACAGAATAAAAAATACTCAACAGGACAGTATTTTTCAAAAAGAATCCACACAGGCTGAAGTGGAAAAATACAAAGAAATGTATCTGGAAGAAATGAAAATTAGAAGAAGCCTAGCAAATAAGCTGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009104:ENSGALT00000014827:29
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACTGGAGAAGAGCAAGTGCC
R:
TTTCCACTTCAGCCTGTGTGG
Band lengths:
342-1254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]