HsaINT0008661 @ hg19
Intron Retention
Gene
ENSG00000107890 | ANKRD26
Description
ankyrin repeat domain 26 [Source:HGNC Symbol;Acc:29186]
Coordinates
chr10:27303423-27306721:-
Coord C1 exon
chr10:27306431-27306721
Coord A exon
chr10:27303641-27306430
Coord C2 exon
chr10:27303423-27303640
Length
2790 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGC
5' ss Score
4.9
3' ss Seq
ATGCTTTTAATTTGTTTTAGGCA
3' ss Score
9.23
Exon sequences
Seq C1 exon
ATTGATGATCTTACAGCAGAACTGGAGACTGCAGGTTCAAAATGTCTACATCTGGATACAAAGAACCAAATTCTTCAAGAGGAGTTGTTATCTATGAAAACAGTACAAAAGAAATGTGAAAAACTACAGAAGAATAAAAAGAAGTTGGAACAAGAAGTGATCAACCTGAGAAGTCATATAGAAAGGAATATGGTAGAACTTGGTCAAGTCAAACAGTATAAACAGGAGATTGAAGAAAGAGCAAGACAGGAAATAGCAGAAAAATTAAAAGAAGTCAATCTATTTTTACAG
Seq A exon
GTTAGCTTATGTGTAGTGTGCCTTTGTTCATTTCACTGCAAATTGTATTTTGGATATATACATTATATGTGTTTCCTCTACATCCCTTATAGCAATTTGTTCTGTAGATTTCTAGAAGGATGATGGCATCTGTTTCTCCCTTTAGATATTCCAGTTTCCATCATTATTATAACTAAATTGATGATTTAGAATAATGATTTTCATCAGAGAATTATTTGACTATTAAGACCAGTTGGCATAAAACAAAACCATCAGGAAAAGAAAGTATTGTGATTTAGAAATTATACCATATTCTTGAATTGTTCTTAAATTACATTGCTCACTTTTTAAAATTTTTAATTAATTTTATCTTTAAATTATCAGAGTTCATGAGTACTAATGAAACAATGATTCAAATGTTTATACCTCAGCCTTTGGATAGCTGGGACTACAGGTGCACATCACGATGCCTGGCTAAATTTTTAATTCTTATTTTTGGTAGAAACAGAGTCTTGCTTTGTTGCCCAGGCTGGTCTCGAACTCTTGGCTTCAAGTGATCCTCCTGCTTAGGTCTCCCAAAGTGCTGAGATTACAGGCATGAGCCACCAAACCTGGCTGATAAATATTTTAAACTTCAGCTTTTTTTTCACATATTTAAAATTACTCTCTGAATCACTAACTCAAAAGTAAAGGAAAAAAATACACAATAATTACCCAGGTTTTATATAAATTAAATTTTATTAAGGGATAATTTACAAATAATTAAACACAACCATTTTAACAGTTTGACCCAAGTATATACTTGCTTAACCACCCTCTCAACAGAGAACATTTCCAGAAAGTTCTCTCTTGCCCTTTTGCAGTTAATTCCCCCTACTTCATCCCAGGAAACCACTGGGACTTTAACACAACTTGTGTTGTTTTTGCCTTAAAAAAAAAAAAACAAAGCTGGGCACGGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAAGCCGAGGTGGACGGATCACGAGGTCAGGAGTTCCAGACCAGCCTGGCCAACATAGTGAAAACCCATATCTACTAAAAAATTTAAAAAAATAATCAGCCAGGCGTGGTGGCACATGCCTGTAGTCCCAGTTACTCGGGAGACTGAGGCAGGAGAACTGCTTGAATCTGGGAGGCGGAGGTTGCAGTGAGGCAAGATGGTGAGAGCTAGACTCCGTCTCAAATACAAAACAAAACAAACAAATTAGGCTGGGCATGGTAGCTCACACCTGTAATCCTAGCACTTTGAGGGCTGAGGCGGGAGGACCACTTGAGCCCAGGAGTTCAAGACCAACCTAGGCAACAAAGTGAGACCCCATCTCTACAAAAATTTAAAAAAGTAATTAGCCAGGCATGGTGGTGCATGGCTGTAGTCCCAGGTACTTGGGAGGCTGAGGTGAGAGGATCATGTAAGCCCAGGAGTTTTCAAGGCTGCGGTGAGCTATGATTGTGCCACTGAACTGAAGCATGGGCGACAGACTGAGACCCTGTCTCTAAAATAAACAAAGCCAAAGGAATGTCTTTCCTCTCTTACCCACATGGGTATATGAGTGTGTGAGTGTGTGTGTGTCTGAGTGAGTGATAAAAATCTACTTAATAACATGAGTTTGTGTGTCTATGAGTGATTAAAACTCAATAATTTAACAAATTTGTTTTAGTTGGGATAAAGAGCGATTGAGAACTGCGTGGGACCCCTGTGCTTATGAGAGAGGATGGAGGGTGCAAACTGGTGGAAAGGATGTGAAAATTAACAGAGAAATTTCAACTGGGCCACTTGAAAATATGTAGCCGTTGTGAGAGTAGAAAGTCTTCACTCCTCATTCTCAGCTCTTTCCCTTCCCTCAGGCTAGTGAGAGATAGGAGTCTTGGAACACAATCTACAAGGCCAAGGTGGTAACAATCCATGATAACACAGATTTCTTCACATGGTATTTATGATAGTCTTACAAAGCTCTGCATGTTAGCTCTTAGAGACATGGAATGAGAATAGGAAGAAATCTTAGTGATAAGCCAGTGTAGTTTCCCATTTTACAGATGAAGAGACCTAGGGAAAGGTTAAACAGCAGGGCCCAAGCCATAGAGCTAGTCAGGCTCAGGATCACACTCCACATTCCTTTACTTGTAGTCCAGGTGATTCCATAACCTTATGCTCCAGCAGGTAGAATTACTGTAAGAGATCCAACACCTTGGGCTTTTTTCTCAGCATGTATTGATGCGCACAGCATTTATCCCTAAGAAGCTCTAAGTTCCTGTATCTTACATACAGATGATTGCTTTAATTTACTTTGCCAGGTGTATTCATAAAATGGAATATCACATCAAAATTTTTAAGCATATTCAAGTCTTCCCCATGAATATATTTTAACACAAAAATAATTTTTATAAGATTTTTCATTCGAAAATATCTCCACATTTGTAGTCATTTTCTTTCTTAGGTTTTCCTTATGTTACCAATTATAATTTTTTATTTTCTATATGACATTTCCCCCCATCGTTAGACATCTGGGTTGCCAGTCAGCCTTTATTGTTTTGATTACTTCATCAAGGATGAAAATGCTTCTCTAGTAGAAACTCACTTTCATTTCTTTGGAAGTATTTGGATTCCCTTTTCAATTAGAACCCTGGGATGTCCTCTTATCTCTTTGACCAATGCCTGCTGGCACAGAGATCTTTCTCTTTTTGGAGTTTGGGTTAAAAACAAAACAGCCCTTAGACACCGAGTAGGTGACCATGGTCTTACTCAGGTTATATATTTTTAAAACATATGCTTTTAATTTGTTTTAG
Seq C2 exon
GCACAAGCAGCATCTCAAGAAAACTTAGAGCAGTTTAGAGAGAATAATTTTGCTTCAATGAAAAGTCAGATGGAACTCAGAATTAAAGATCTGGAATCTGAACTCTCCAAAATAAAAACTTCTCAAGAAGACTTTAATAAAACCGAACTGGAAAAATATAAGCAACTCTATCTAGAAGAATTAAAAGTTAGAAAATCTTTGTCAAGTAAACTAACCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107890-ANKRD26:NM_014915:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.077
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120013=DUF3496=PU(46.4=83.9),PF119023=DUF3422=PU(60.0=77.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)