MmuINT0015558 @ mm9
Intron Retention
Gene
ENSMUSG00000007827 | Ankrd26
Description
ankyrin repeat domain 26 [Source:MGI Symbol;Acc:MGI:1917887]
Coordinates
chr6:118457656-118458798:-
Coord C1 exon
chr6:118458508-118458798
Coord A exon
chr6:118457871-118458507
Coord C2 exon
chr6:118457656-118457870
Length
637 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
TGTGTTCTCTCGATCTGTAGGCT
3' ss Score
10.04
Exon sequences
Seq C1 exon
ATTGATGATCTTACAGCAAAACTGGAAACTGCATCTTCAAAATGTCTACATCTGGGTAAAAAAAATCAGCTGCTTCAGCAGGAGTTACTATTGATGAGGACTATACAAAAGAAGTGTGGGAAACTAGAGAAGAATAAAAAGCAATTGGAGCAGGAGGTCGTGAACCTCAGAAGTCACATGGAGAAGAACATGGTGGAGCACAGCCAAGCACAGCAGTACGCGCGGGAGGTCGAAGAGCGAGCGAGGCAGGACTTGGTGGAAAAGTTAAAACAGGTCAACCTCTTCCTGCAG
Seq A exon
GTCAGCTTGTTTCCATGGCCACTGTGGTTCTCACACTCTAAGGGAGAGATGGAGTGTGTGTGTGTGGGGGGGGGGGGGTTGCACAGCGTCCTGTGTCTCCTCAAATCTTAGAAAAGGACACGTGCTTATCCCTAGAGTTTTAGAAAGTTCTAGAGAGAAGAAGACACGTGCTTATTCCTGTGTTTGAGGATTCTTTGTTGTTATAACTCAGTGGACCTTTCATTAGAGACTCATTTGACTTTCAAAGCTAGTTTGCAAAAACTGAGATTGTTAGAAGGGGAACAGAACAGGTTGACATATGAAGCACACGAAACTCTCACGTTACTCCTAAGCCATCTAGTTCAGGCTTTCATCTGGAGCTGATTGAGTTCTTGAAATGATGAGATCACTGTGTGCCTATGTGTCGTTCAGAGCTGGGCATACCCGCAGTGGGAATGTGTTCAGTTAGCATGCACCAGGCCCTGGATTTGAGTCCCAGGACTAAATAAACAAAAGACGATGAGGAAGATTCCATTTTTTATAATTTCCTGTCTTAATCCCAGCATCAGCATCTGCTTTCACATGTTTCATTCAAAACAACTGGACAGTAATGATTCGGGTTATAACTGCTTCTGAAGTGTGTTCTCTCGATCTGTAG
Seq C2 exon
GCTCAAGCAGCATCCCAGGAGAGCTTGGAGCAGTTAAGAGAGAACAGTAACGCTTCGGTTAGAAGTCAGATGGAGCTCAGGATTAAAGACCTGGAGTCCCAGCTCTACAGAATGAAAGCCCAGGAAGACTTCGATAAAATAGAACTGGAAAAGTATAAGCAGCTCTACCAGGAAGAGTTCAGAGCTAGAAAATCGCTGTCAAGTAAACTAAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000007827-Ankrd26:NM_001081112:30
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=NA C2=0.194
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120013=DUF3496=PU(46.8=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCAATTGGAGCAGGAGGTC
R:
TCTAGCTCTGAACTCTTCCTGGT
Band lengths:
342-979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: