RnoINT0017763 @ rn6
Intron Retention
Gene
ENSRNOG00000006717 | Ankrd26
Description
ankyrin repeat domain 26 [Source:RGD Symbol;Acc:1310736]
Coordinates
chr4:150552078-150553163:-
Coord C1 exon
chr4:150552873-150553163
Coord A exon
chr4:150552293-150552872
Coord C2 exon
chr4:150552078-150552292
Length
580 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
GCGCTTCCGGTCTGCCGTAGGCT
3' ss Score
8.21
Exon sequences
Seq C1 exon
ATTGATGATCTTACAGAAAAACTGGAGACTGCATCTTCAAAATGTCTACATCTGGGTAAAAGAAATCAGCTGCTTCAGCAAGAATTACTGCTGATGAAAACTCTACAGAAGAAGTGTGGGAAACTCGAGAAGAGTAAAAGGAAACTGGAGCAGGAGGTGGCGAGCCTCAGGAGCCACATAGAGGAGAACATGGTGGAGCACAGCCGAGTGCAGCAGTACGCGAGGGAGGTCGAGGATCGAGCGAGGCAGGACTTGGTGGAAAAGTTAAAACAGGTCAACCTCTTCTTGCAG
Seq A exon
GTCAGCTCGTGTTCGTGGTGCGCTGTGGTTCTCATGCTGCAAGCGATGCCTCGGGTGTGCACGCAGCGTGTGTCTGCTCGAGTTTTAGAAGAGGACACGTGCTTGCCCCTAGAGTTTCGGGGAGAAGAGGGCACTGATTATTGCTGTCCAGTGTTCTTTGCTGTTATAACTCAGTGGGCCTTTCATGAGAGACTCATTTGACTTTTAAAGCTCGTTTGCAAAACATAGATTGCTGGAAGGGGAACCAGTTGACATAGGAAGTACAACAAACCCTTGAGTTACTGTCAAGTCATCTAGTTCAAGCTGGAAATCTCGAGCTGACTGAGTTCTTTAAATTATCAGACCACTGTGTACATGTGTCACACCGCAGTGGTAACGTGTTCAGTTAGCACGCACCAGGCCCTAGGTTTGAGTCCCAAGACTAAAGAAACAAAAGAAGATGGAAAAGATTCGGTTTTTTATAATTCCCATCTAACTCCCAGCATCAGCATCTGTGTTCACATGTTTCATTCAAAACAAACGAGCAGTACTGATTCGGGTTATAACCGCTTCTAACGTGTGCGCTTCCGGTCTGCCGTAG
Seq C2 exon
GCTCAAGCAGCGTCTCAGGAAAACTTGGAGCAGTTAAGAGAGAACAGTAACGCTTCACTTAGAAGTCAGATGGAGCTCAGGATTCAAGACCTGGAATCCCAGCTCTACAAAATGAAAGCCCAGGAAGACTTCGACAAAATAGAACTAGAAAAGTACAAGCAACTCTACCAGGAAGAGTTCAGAGTTAGAAAAGCGTTGTCCAGTAAACTAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000006717:ENSRNOT00000073562:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.072 A=NA C2=0.153
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF120013=DUF3496=PU(46.8=72.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAAACTGGAGCAGGAGGT
R:
ACTGGACAACGCTTTTCTAACTCT
Band lengths:
358-938
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]