BtaINT0021739 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012147 | ARRDC1
Description
Bos taurus arrestin domain containing 1 (ARRDC1), mRNA. [Source:RefSeq mRNA;Acc:NM_001080365]
Coordinates
chr11:105543445-105543887:-
Coord C1 exon
chr11:105543777-105543887
Coord A exon
chr11:105543496-105543776
Coord C2 exon
chr11:105543445-105543495
Length
281 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCCACCTCTCGTGTCCTCAGGGA
3' ss Score
11.33
Exon sequences
Seq C1 exon
CCATCCGCGTGACCTGCACGGGGTCCTGCAGGGTCTCCAACAAGGCCAACGACTCGGCCTGGGTGGTGGAGGAGAGCTACTTCAACAGTGCCCTGTCTCTGGCCGACAAGG
Seq A exon
GTGAGTCTGGAACCCACCCCTCCCCTCCTCCCACTAAGATGGGTCTGTCTGTCCCCCTGCTTTCCCACCTGCCTCTGGCCTCCCCGTGGCTGGCCCGCCCTCTCCCAGGGTTTCTCTCTGTGGCAGGAACAGGGCACTGCCTGCTGGGCGCTTGGGGCTGAAGGGGCCAGTCCCTCCCAGGTTTGGATGGGTGCAGTGGGAGCTTGTCGGCTGCAGGGCCTGCTTCGGCTCTGGGCCCTGTGATGGCGCCTTGTCCCCTCTCCCACCTCTCGTGTCCTCAG
Seq C2 exon
GGAGCCTGCCTGCTGGAGAGCACAGCTTCCCCTTCCAGTTCCTGCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012147:ENSBTAT00000032616:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=FE(27.8=100)
A:
NA
C2:
PF0033924=Arrestin_N=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCGCGTGACCTGCAC
R:
GAACTGGAAGGGGAAGCTGTG
Band lengths:
151-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development