GgaINT0124231 @ galGal3
Intron Retention
Gene
ENSGALG00000008475 | ARRDC1
Description
NA
Coordinates
chr17:2374508-2383635:+
Coord C1 exon
chr17:2374508-2374618
Coord A exon
chr17:2374619-2383584
Coord C2 exon
chr17:2383585-2383635
Length
8966 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
GTTACTCTTATTTCCCACAGGAG
3' ss Score
8.93
Exon sequences
Seq C1 exon
CCATCAAGGTGAGCTGCGTTGGATTCTGTGGGGTGTCAAACAAGATCAATGACACTGCCTGGACCGTGGAGGAGCAGTACTTCAACAGCACGCTATCTTTGGCAGACAAAG
Seq A exon
GTGAGCTTGGTGGTGATCTGTGGATGTGTGGTTTCCTACTGGGAGATGACTGACTGAGGTCTGCAGCAGTGCAGCGATGTGATATTTGAAATATAAGAGCTTAAAATATACGAGCCGATATTGGAGACAGCATGAGCTGTGCAGAATGGCATCCTGATTGGCTGCACAACTTGGCAGCTACCTAAAACATGGTGCATCCTCCTGCCCTGCTCTGTCTAGAGTGGGGCTGTCAGCAGGTGGATGTCTGTGAGCACAGCGGTTGTGAAGGCCCTATGGCTTCACCCTGCTCTGCTTTCCATGTATTATCTATGGAAGTATCAAAAGACTTCTCAAAACTGGTCAGCTGAAGCTGGTTGCAGGCTGGGAGTGGTTGAACTACACTGAAAGGGATATGGAGGTGTTGTTCGTCCTACAGGAGAAGCACTGGAAATGTGGCATGAGCAGCCTGCGGCAGCTCCCAATGCACAGCTGCCAGCCCAGCTGCCTGGAGATATAGCAGTGGGGCTGTGTTATCCTGCAGGTAAAGTGACACCAGTTGCCTCAGGGGAATCTGGGCTCGAATGAATGCTGTCATTCTGCTATTAAATAGGTCAACCTTAGCATAAATAATTTATGCTGTGCCCTGGCTCCTATCAGAATCAAGAGGTGCCTGTATTCACCTGCTGAGGGCAGTGGCTGTAGCAGTAATTGTAACGTGGCATTAGGCCAGGCTAGCAGTGCAGTCCTCTGATGCTACACTGATCCTCTGATCTAGTAACAGGAAATGGGTGAAGCTGAAGTGGCAGCTTCTGCCAGCTCAGCAATTTCTCAGGCAGAGCTTTTAGCATGGAGGGCAGACTGACCTCACTTGGAGACAGTGCTGCTTGCTCAGGTCCCAGGAAGGGAGGTGGCTGGCTCGCTGCTCAGTTTGGCTCCTAGCCTAGGGGCTGCAGGAGGAGTCAGACTGTTTGGAAGGGCAGTGAGAGCTGGTTCTGCTTTTGGACATGGTAGTGATCACAGCCAGGGAGCTCAGCTGTGAATGCTGGGCTGGCAGAATCCTGGAGGCTTTGTAAGGGGCTGCAGACAATTCAGTATAGGTGAGCTGGAGACTATGAACAATAGTGGGCTGCTGGAGAAGCTCAAACCTGCAACTGCGCTGAAAATGAACTTACACATGTGTTTCTAGTGTTAATGATTCATGAGGAAACTGTGCTACTGTGGATGGTTCTGTGCTGGTAAGGCTGAGTTACAGCTGAAGCCATGAGATAGGAGTGGGAAGAGGTGGGTTTGCAGCCCCTGGGAAGTGCTGATGGCTGCTACTGCAGTTGGTTATTGCACGGTTGCATCTGGGAGCTATCCCCTTGACAAATGGAGCAAATGTGGACTGGGAAGGACAATATTGTCCCTTAATGTGACACCTTTGAATACCTGAATTCCAGAAAACCTGCAAAAACTGGTATTCCCAGCTCCTGAAGTCATCACGAGAAGCACTAGTCTTCTTGCTCTTGACTTTTCTGGAATCCAAGCTGTTGCACGCTGCTGAGTTTGTGTGTCAACCCCAGTACTGCAGGTGGCCTGGGCCTGAGCCTTGAGGGGTGCTAGGGCCGTGCTGCTGTGCCTTGGTGCTGCTGTGGAGCTGGCAGCTGCATGCCAGCATCTTCCTGTGCTAATGCAGCCCAGGGCAGGAGGGAGTGAGCACTGATGGAGCATGAGTGATCTGAGGAGCTGTGGATGCAGTGAAGAGAAAATCTGTCCTGTAGGGCCACCGAGCTCGGAGCTGAGGTGTGTTGTGGTGCTGTTACTGCCCTGTCTTGCAAAGGTACATTGCAATACTGGGGAAAAAGCAGGCTGTAGCTAGCAGCAATCCAGAGCAGCACACCAGGTACTGTCACTGACAGTTCTGCTTTTTGTGTCAAAGGTGACACAGCTGTTGGCAGCTGGGACAGAGTGTCTGTGCACGTGGCTGGCATGCCCTCCATGGTTTGACACCCCTGGTACAGAGACACAGCTGACCTGTGTCGTTTCTGAACAGGGAATGGCCATGGGCTGGGTGCAGGGGACCCCCTGGCTCCCTGCTGGCACTGTCCCCAGAGCTCTGGCATTGGGCTCATGCAGGCAGACCATGAGGGAGGACCCCAGGTGTCCCCAAGGCCATGTAGTCACCACGTGCCCAGCTCTGCTGTCCTTGGGGCTGCAGCAGCCCTGCTCATGTGAGATGGAGCAGAGAGGGAAGCTCAGTCTGATAAAATGCTTGCGTGATCTCTTCGCATGTTCTGAGCGGCAAAATAAGAAGAAAAGCAGCCTGTGCTCTTGGAGGACGTGCCGGGGGAAGAGAAGAGATTTGCCAAACTATGGAGACTTGGAACACTCTCTAAGCATTTGAGAGCAACTCTGCTCTTCTGCACCCACTCACCTTGTTGCTGAACTATGAGGGGGTGCAGCCACTCCTATATGGCATCAGCTGTCATTTGTTTTACAAACATGACTTATTTTTTCTTAAAGGGTGTATATTGCATGAGAGGAGACAGACCCTAAAAAATATCCTGTGTGCCCACTTTGCAGCACAAGGCACTATTTAAGGCACTGGTTACATCCTTCGCTTCTCTCCTTGCTTCCACATCAGAGCGGCATCAGTGTGGGGGGGCTCAGGCTCCCTCCTGGCTCAGCAGCAGCTCAGAAGGCCCCACTCACCACTGTGCTCCTGCCTCTAGGAGCTGGGTATTGCGCAGGGTCCGTGCTGTAGCCTTGGCAATGACTTGCAGCCCAGTGGTTTAATGAACTCTGCTCGTTACAGGGAAGCTGTCAGGAAGCGCTGAGGGCAGCAGCTGCTCTGAGTGCATGCACTTAGGGCCTCACTGCTGTGTTTGCTGGAGAACACTGTGCAGGGCTGGGGAGGTCGCTGGGCCTGTGGGGGGGGAGGGGGGATCTCTTTGTTTTGCCTCCCAGAGGGAAGGGTTTGCTTTTCCCACCTGACCTGAGTTTGGCTTGGCCCCTTGCTCACTGGTGCTGGCTCGTCCTGGGTCATCTTTTTGCAAGGAGGAAAACAAACAAACGCAGTGATGAAGAGAGACCCACAAACGTGAGTGGTGTTGGTTTTCTCTGGGTATCTGCGGTACAGGAGATCAAGTACACCAGTTGCTGCGAGTACAAAATAGCCTTGCTTGTCCCCACTGCTCAGACAGAGATGCTTCTCTTGATCCCATATAATGGAGTAATTCAGCTCTGCAGAGGACTCGTGCTCCTCTCCCCTCCCCTTCTGCAGCTCCGGCCTCGTTCAGACAGAGAGGAGCAGGTCTGCCATGAGCCTGCACAGGGCTGTTTGCTTTGGCCATGCTCTGTCTCCAGCTGCGCACACAGCTCTTGCCCTGTGGATGGATTGTGCATGCAAAGGTAGACTTCTTTAAATCCTGCTTGTACCTGAATTGAACCCATGCAGGGAGCTGGCTGTAATTGCCAGCTGACCTTCCTTTTGGCAGCTTGTTAGCTCGCTAGCAGGCACTGCGGGGAATTCCTGGCTGCTACACTTGCTTCCTCCTCTGGCATATTTCTTGTGCAAAGTGCTAAAATGGGGCAGCTGTGCATCACCTCTTCCCTGCTGGCCTGGCACAACACCTTCCCAGCCATCACAGGCTGAAAGATTACAATTCTGTCTTCCAACAGAATTAAAAAAGCATGATGACCTGACTGGGCAGGCATGGAAGGATGCAGGAGGGGTCTTGGTCTGTTCTCAGGAGTAACTGTGTTTGCAGGATGGAGCAGAGCAGTGGGGCTGGACAGCCCTGGAGGAGGTGAGAGCAAATATGAGCAGTGATGAGCCCTGAGAAGTCTCTGGTGCCAGCTCGTGCCCGCACTGTGCTGCTGGTTGTGGAGCAGTAACAGCACATTCAGCCCAGGAAGACCACGTGGAAAGAGCTGCAGTCACTGTGGGTCTCAGCAGCTTTCTCAGCACTTCCTAATTTCTTGCCTCAATAGATCACTGTTAATCCTCAGAGGTTTTTGCAGCATTGCTGTACTGCCAAATCCTACTAATTCTTTGAAAATGTCACTGAGAACTGCTGATACAGAGAAGTGTAAGCAGTAGAGCCTTTACTGCAGCCTTGCTGCTGAGCCTTCTTGTGTTTCCATCCTCTGTGCGTACCTCCTGTGTTATAAAAAGGTTTATCTCGGCAGCATTAACCATATGGGAGCACTGGAGGTTGTTCCCACTGTGTGTTTGCATGCAGCTAATCCAGCATGAGCAAGTTGCTTTGAATGGGAGCCTAGAGCTGGGGCTGTGCCCGCGCTGCTTGTGCACTGTCCCTGCTCAGCTGAAGGCTGCTCCGTAGCAGCAGTTATTTTGGGCAAGCAAAGCCAAGCTGAAGGCCACGTCCTCCCCTGGCTGTGCTTGCTGTTGGGGCTGTTCAGGCTACTGCTGCTTCCTCTGAGAGCACTTGTATCTGTTGCTGGTCTGGTGCCAGCAAATGGGTGCGTTTACCCTCATTTGTTGCAGCTTGTAATCCCATGTATTAGCTTAATCCACCAGAGTGGGAGTCCTCGTGCTAATGCTGCGAGTGCCCAGCATCCCTCAAAGTGCCCCAGCGCAGGCAAAACTGATGCTTCCCTTCTGAGACAGCCTCCTGGATGAGAAGAGCCCTGGTTTTGCTTACAAGGCAATTTGCTGGGCTGCAAAGGATGGCAGGGGTGCAAGGTGCTGGCTGTCAGGGCTGCATGGAGGGGTGGCACTTCCAGCAGCTCAGGAATGGGGATCCTGTCACACAGCGCAGAGGCAGGGCTGCCTCTTTCTCTGCTCAGAAATACAAACCAGTACCCTTTTCCTTTCCTGCTCTTCACATTGATGCCAATCACATCTGTCCCACGGAGAACTTGAGCTGGGCATCTGCAGTGCTGATACCTGCTGAATTTGGTGGCTTTGGGGAGCTCGCCTGCCCTGGGGCAGCAGGATGCTGCAGGGAGCTTCTATTGCTGCGAGCAGTGGCAGGGAGCCAGCAGGCACCAGGTACCTGGCCCTGCTGCAGACTTTGGCCAGCACGCTCAGTACATCACTCACTGAGTAGCCAGAGAGAGATTGCCATATGGCCCGGCCTGCTGTTCCCCTGTTAGAACAACCAAAAAGTATGTCCTGTCCAAAGGCTAAACTGGTTTGTGCTCCAGAGCAGCAGTGTCTGCTGTCATAGGCAGGATGGTAGTAGCCAGCAGGGCTGGAGGTCAGGCAGGAGTTGGCTCCGTGCCGGGGTGGAGGACACCTACCAGGCTCCTGGTCCTGGCTGCAGAACAGGTAGCACCCTCCTCTTTGGGGATCAGAGGGAGCAGCACGCTGAATATCCATCTTTGAAGCCCTTGTTGAGCCGTGCATGAAGCCTGGCAAGGCAGGGAGAGGTGAGTGCTGCACCCTGCGCTGCCGTTACAGCTGTCTGGCCCCGCAGGCTCTGGCATGCTCAGACGTCTGGGCTGTCTCTCCCAGTGCATCAGAGTGTGAGATTTCAGAGGGGTGAGTAATGCAGCTCAGCTGAGTTTATTGTTGCTGTGCATTGGAGGCCAAGGCATCTCCCAGCTCTCTGCTGGCTTCTCTGCAGCTCCGTGCCCTGTTGGCACTGACCTGGGCACTTTGTCCCTGTGGTGGTAGGCTGCTGTGGGTGGACAGGAGGCACTGCTGGGCACAGAGCCCTGGCTCCTGCAGGGATTTGGGATGGAATTGCTGGGCCTGGGTCAGCAAACAGGGAGGAGGCATTTGGCTGATGTCTCCGTGGCAGCACTGGTTTGAACTTCAGGCCCCACCTGAACTGTAAGAGCAGTTTGTTTATGTGGGCTGCTAGAGGGAAAGCTGCAGAAAAACCTGGGAAGCATACAGGCTTTGTGCAGTTCAGCTCTGCTGCCGGGAGATCCCTACCAGCCTGGGCTGCCTGCACCTTTGTGCATCAGTCCCAACCTACCTGCAGGTACGTCCAGCTCCAGGGCAGGCTCAGGGCATGGACAGCTTGAGCTGAGCGCAGGAGTCCTGTGTGACCCTGGGGAGAGCCTGCAACCTCTGTCCCTGCACAGCATACGAGGTGAGCGCTGTGACAACGAATGCCCCGAGCACCATGGGATGCTCTGAGATTACTGCAGGGCAGAGCTGGGCTCAGGGCTGTGCTCCCCATCCCAGGGGATGCCCCGTAGCGCACTGGGCACCCCGGTGACCTCCTGGGTACTCCTCCCAGCCTTCCTCCACATTCAGAGGTGCAAACAAAGCCTCTGTCCCACTGTGGCAGCGAGGGGAGTGGCTGAGCCATGAAAGGGAGAGTCCTTCTGTGTCCAGACAAACCCTTGCTGGCAGTGGAAGCAAGAGGGGAAATCTCCAAGGTTGTTCTCTGCGCTGTTGGCGTGTCCCTGCTGCTCCAGCTCCTTGGGTTGTTTGTTTTCCCTTCCTATGGCAGCAGTTCCTTTCCCTCCAGGACTTTGTAGGGAGGATATTTGTGGTGTGAGGCAGTTGAGCCCTGCTGGCTCGGCTCCTATGGGGAAGGAGGGCTGCAGGTACAGTCCCATGGCAGAGCCCTGCAGGGCTGCCTCCCTCCCCTGCCTAATGACTTTCTCAAGATATTTTTAGCTGCACGTAAACTTCAGGAAAAGCTTTTGCATCTGAACACAGTGTGGCCTTTGTTTGGGCTTTGGGGAATGGTGAGGTAATGGCTTAGTGAGGCTGTGGCAGCTTGCACGGCTCTTTCCCCTCACTCTGTGCATTTAAAAGCTGCTTGGGAGCCCCGGAGCACGCTGTGCATGGATCCAGCTCCGTGCTGTGCTCCTTTGAACCTGGCCTGGTCTCCGCTTAAGGGTGTTCTTAGCAGAGCTCCTGATGCAGCAGCAGGGAGCAGCTTGGCTGCTGTGAACGTCTGCCTGTGCTCTGCAGCACCCGGGCTTCCCAGCAGCCTTGTCAGTCCGCCAGGCACCCGAGCACACCCAGGCTTTCGCAGGAACTTCCCATCGTGGTCAGGATCTTCTGTTTATCTTCATCTATTTTTATTAAGCCTTTTCCCAGGAATAGCTCTGGCACTGAGCTCCTGGGTATGCCTTCATGGGGCTGCCCAGAGCTCCCTGCTCCAGCGGCCTCCAGGCTTGCAGTGTGGGCAGCAAATGCAGGCGCTGTGTGCTGGGGCCCTTTGAGCAGCTGGTCATTCATTAGCCATTCATTAAGCAAACCATGTCGTGTAGTGTGGTAGTAGCTGCTTGGTCCAGGCTGCTGCGACCATTGGAAAATCCACTGTATGTAAAGGGTCTCAGGGCTGCATAAAGCTGCTTCCCAAAAGTGAGGATGTAGCTGTGAAGTCAAAGCTTTACCTTAATAAGGGGCAGGAGCTCTTGGAGCTGTGGCTGAGTCCTTTATGTCAATCAGGCTTTGTGCTGGAACCTCCATGAAAAGGCACCTGCTGCCCTCCACTGAACGAGCCCTTCCCAAGAAGGGAATAGGAGAAGGCTGGAGTGTCTCGAGGCTGCCAGAGCAGGCATTGAGTTGCTTTATGCCTCCACCTTGTGACAAGCCAGCATGTTGCATTTTAGCCTACATATCTAGTTTTATCTGAGGATGAGAAGGGAGATCACCGGGAGTGTGTTTTGGCTTGGAGTGATGGCAATGGGCAAACCATCTCCATTCTGTACGGGCTAAGGGCATGAACAGACAGCTCTGCTTTCCATCCTGACTTACCATAGCAGTGGGATGAGATCAGCTGCAGCTGTGTGTGATGGGGGCTGCAGGCAGTGCAGTGTTTCCTAATAGGAACTGTGGACCGGGCTGAACTCTGCCTCATCTACCTGGGCATGTGCTGCAAATGGGGGCTATTCTCTGCTCCCTTCCCCTGTCGTGTAACCCACCCGATCCCCTGATACCTGGGCTTTATTACTGTCAGCTCTGCAGAGCCAACATTGCTAACAGGCAAGCCATCTCCTTGCTCTTGAGTCAACTGAACAGCTAGCCAAATGTAGAGCCTTAGTACCTCCAGCAGTGATCCTGCAAAGCAGAACAAACAGAGCTTGAGTTAATAGGTATCCAGGTCTCCTCTTAGCACTGCCAATCTGGAAACAAAACCTCTCATGCTTATTCAGTAAATGTGGATTCCTCTTTATATCTCAGTGCTTTGCTGGATGAAGGCAGCCTAAGGAGCTCCCTGATGCTCCCAGCTCACACCGTGGGGCCGGATTGGGGTCACTGCTGCCCTGGGAGGGGTGGGAGATCCAGCTGGGTGCAGAGGAGCCTGGGGTTGGAGCTGTTGCTGGAGCTGTGTGCCAGGTCTTGGCTCTGCTCTGCACCCTCGAGGCGGCAGTTGCAGGGAGCTGAAGAAAACCAGCACTGAGGTTTGAACTCCCAGCGCTGGGCTGGGAGGCTGCAGCCTTCCCCGAAGCACTTGGTGCCACATGTGGGAAATCACAGCTGTGGTTTTCTGCTCCACACTGCAATGACTGCCCAAGGGGAGAATTCAGGGACACAGTTGAAGTTACTTCTTGACTCTGGTCCTCCAGACAGCTGGTCTGAAGTATTGCAGGTTCCATCTTGGGGGCAGGATCTGCAGGGGTGCATTTAGGCCAGCTTGGTGCCCACCAGACCTCCTTACCCCACCTGCAGGCAGTGCCTTTGCTTTCTCATCTTCCCCTGAGTGGCTGCTGCCTCCCTGAGGGAAGCAAACACAGCATTCCCTCTTCATGCCTTCTATCAGTAATGTGGGGCTACCTGCCGTCTCTTAAGCATGCTATGGTGTTGGCATCCCTTCAGCCCTGCCCAGGCCACGTTATTTCCAAAATATCTTCACCTAGGCCTCATTGGGAACAGAGATGTGTCCTGACACAGGGACAGGTGGGTTGCTCCTTGGATGCAGAGGGTGAGCGTGGTGGTGTCCAGGGGTGAAGGCAGCTGGACAATGCCATTCCCTTGGCATTGGGCTCTCTTGCCAGAAGCTCCTGTTCCAAAAATACCATTCCAAGGTGACAACCTCCCACTTACCTGTTACTCTTATTTCCCACAG
Seq C2 exon
GAGTCCTTTCAGCTGGGGAGCACAACTTTTCCTTCCAGTTCCTGCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008475:ENSGALT00000013811:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=FE(27.8=100)
A:
NA
C2:
PF0033924=Arrestin_N=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]