MmuINT0019320 @ mm9
Intron Retention
Gene
ENSMUSG00000026972 | Arrdc1
Description
arrestin domain containing 1 [Source:MGI Symbol;Acc:MGI:2446136]
Coordinates
chr2:24782646-24783359:-
Coord C1 exon
chr2:24783249-24783359
Coord A exon
chr2:24782697-24783248
Coord C2 exon
chr2:24782646-24782696
Length
552 bp
Sequences
Splice sites
5' ss Seq
AGGGTGAGT
5' ss Score
9.25
3' ss Seq
CCTCCTTTTTGTCTCTGTAGGAA
3' ss Score
12.56
Exon sequences
Seq C1 exon
CTATCCGGGTGACCTGCATGGGTTCCTGTGGGGTCTCCACCAAGGCCAACGATGGGGCATGGGTGGTGGAGGAGAGCTACTTCAACAGCTCCCTGTCACTGGCTGACAAGG
Seq A exon
GTGAGTGTGAGAGCCAGCAGTGATCACAGGGGCAGCCCTTGACTGGAGGGGGTCAGCCTGTCCTTTCCCCTCCCTGCAACCGTCTCTTGGATTCCCACTTTCTGGGTCTGGGTGGACTCTGATGCTTAGTTATGACTGTCATCCCTGTTTTTTATTTTATTTTAAAATTTGTATTTATTCACTTTTGAGACAAGGTTTCATGCAGCCAGGCTGGCCTTGAACTTGCTATTTAACAGAGGATGCCCTTAAAGTTCTGATTTCCTCCTTCCACCTCCCAGGGGTGTGCTACCATATGTGGTTTGCATAGTCCTTGGAATTGAACTAAATCTTTGTGTGTGCTAAGCAAACACTCTACTAACTACATTTCCAGCCCCACACTTTCGTTTAAAACAAGCCCTTGTACGTAGCCTGTAGCTCCTGCTATGGTCATGCTGCTATAGTGCTGGAGACAGGTAGTGTGGACTGGTGGGCTGCACTGTTTACTTCTGGTCTGGCACTGTGGCCGCTATGGATTTCCTCTGGTTTGCTCCCACCTCCTTTTTGTCTCTGTAG
Seq C2 exon
GAAGTCTGCCGGCTGGAGAGCACAACTTCCCTTTTCAGTTCCTGCTTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026972-Arrdc1:NR_027876:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=PU(23.5=32.4)
A:
NA
C2:
PF0033924=Arrestin_N=PD(0.1=0.0),PF0033924=Arrestin_N=FE(73.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: