DreINT0033632 @ danRer10
Intron Retention
Gene
ENSDARG00000068148 | arrdc1a
Description
arrestin domain containing 1a [Source:ZFIN;Acc:ZDB-GENE-030925-15]
Coordinates
chr5:28925148-28925397:-
Coord C1 exon
chr5:28925287-28925397
Coord A exon
chr5:28925199-28925286
Coord C2 exon
chr5:28925148-28925198
Length
88 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
TCTCACCATCTGTTTCCCAGGCA
3' ss Score
8.2
Exon sequences
Seq C1 exon
CCATCAAAGTGAACTGCCAGGGCTTCTGTGGCGTTACCAGCAAATCAAATGACACCGATTGGACAGATGAGGAGCAGTACTTCAGCAGCTCTGTCTCAATAGCTGATAAAG
Seq A exon
GTAAGCAGGTGTCATTAGTCTTGCTTGCATCATAAATGCTAGTATGCTAGATCACTTCTCTTACAGTGTCTCACCATCTGTTTCCCAG
Seq C2 exon
GCACTCTCAAAGAGGGCGAGCACAGTTTTCCCTTCAAGTTTCTCTTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000068148:ENSDART00000098360:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0033924=Arrestin_N=FE(27.8=100)
A:
NA
C2:
PF0033924=Arrestin_N=FE(12.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCAAAGTGAACTGCCAGGGC
R:
GAAACTTGAAGGGAAAACTGTGCT
Band lengths:
151-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]