BtaINT0024425 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55994199-55996161:+
Coord C1 exon
chr5:55994199-55994378
Coord A exon
chr5:55994379-55996015
Coord C2 exon
chr5:55996016-55996161
Length
1637 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
3' ss Seq
TCTCCCCACCCCGTTCTCAGGGG
3' ss Score
9.91
Exon sequences
Seq C1 exon
GGTGGGACTTCTAGGAAGGGAAATGCTGAGCCGGATCCTCCAGTAAGACTCTTCCAGATTCAAGGACATAACAAATCTAACACCAAAGCAGTGGAGGTCCCAGCCTTCACCTCCTCCCTAAACTCCAATGATGTCTTTCTGCTGAGGACGCAGGCAGAGCACTACCTGTGGTTTGGCAAG
Seq A exon
GTAAGACAGCTGGCCCAGCAGTCACACCCATCCCTTGGCTCCCAGCCCTGCACCCACCCTCTGGTCAGCAAGGGCAAAGGAACTGAGAATAGGCTGGAGCAGTCCTCAAATAGAGGAGCCTTTTCCTAAAGATTCTTCAAAGGGACCAGCAATGTTCCTCACAATTAGGCCTCCAGTTACACACTCAATAATGGCACTGCGCACACCCAGGAGACCCTCCATAAACAGCTAAACACATGGAGGCTGGATGCAGGATGGAAAAGTCAATCTTTCCACACCAGTTTGGTGCACTGTAATAGGACAGGCATTAACACTGAACAAAAGAACACTAAAAATATGATTTTTGTCAATTCAGATTTCATCTGCAATGAAAAGCACTAGAACTGTTTTACAAAAGAGAATTGAATAGGAAAAGATGCTCAATATTAATAGTCATTAGGGAAATGCAAATAGAAACCCCAATGAGATACCACTACACACGTATGACTAATGACTAAAAAACCTATGCTATCTAGTGCTGGTGACAAAAGCAATAGGAATTCTCACACACTGCAGGTGAAAATGCAGATACGGCCTTAGAAAACAATTTGATGGTTTCTTATAAAACATATACCTATTGTATGAGCCCATTCCTGGGTACATACATTCCTGGGTATGTACCCATGTGAAAAAACTACCTTCACACAAAAACCTATACACAAATGTTTAATAGCACCTTTATTTCTAATTGCCAAAAACTGGAAGCAAATCAACTGGAGGATGGATGAGCAAGCAGTGGTGCTTCCACACAATTGGAATGGACTACTACTCAGCTACAGAACACCCACAACTGCCAAGGAAGAATCGCAAATGCATTATGCTAAGTGAGAGAAGCTAGACTCAGAGGCCACACTATGCAGGATTCCATTTACCAGGTTCTGGAAGAGGCAAAACTGTCAGGATGGGAACAGATCCGTGGTTGCCAGAGGCTAAGGATGCATGGAGGGTTTGACTACAAAGGTGTGGGTGGTCGGAGGGAAACTTTTGCAGTGGTGAGGCAACTTCTCTCTTTTTTGTTGTGGCGGTGGTAGTGTGATTCTATGCATTTGTCAAGAGTCATAGAACTCTATGGCAGAAAGGGTGAATTTTCCTGTATATAATTTTAAAAATATTTTTCTTAAAAAAAATAATCACAAGTAAGTGCTAAAATTCCAACTGAAGGTAAAACAAAAGTGACCTCTCAATACCCACCGAGCATTTCAGAGTCTAGTCTGGTCCTTTGCTACCACACTGTTTTCCTCCTTCCCACCCACCCCCACCCCCACCCACCTCCCCCCCAGCCCCCCACCCCCCACCCCTCACCCTGCCTCCACCCTTCCCAGCACCAGAACAAACCCATCTATCTCCCTGTCCTGAGGTCTTTTGGCTTGGTAACTAATCCTGGCTGCTGCTGCTAAGTCACTTCAGTCGTGTCCAACTCTGTGTGACCCCATAGACGGCAGCCCACCAGGCTTTCCCGTCCCTGGGATTCTCCAGGCAAGAACACTGGAGTGGGTTGCCATTTCCTTCTACACTGAGTTATTAGTCTAAGCACTTTATTCCCACATCAACGTGCCTGTGTGTGACTCACATCTGTGTTCTCCCCACCCCGTTCTCAG
Seq C2 exon
GGGTCTAGTGGGGATGAGCGGGCGATGGCTAAGGAGCTGGCCGGACTTCTCTGTGACGGTACTGAGAACACAGTGGCTGAGGGCCAGGAGCCAGCTGAGTTCTGGGACCTGCTGGGAGGGAAAACTCCCTATGCCAGTGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.233 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
NA
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGGGACTTCTAGGAAGGGA
R:
CTTTTGTCACTGGCATAGGGAGT
Band lengths:
326-1963
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]