MmuINT0022335 @ mm9
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:126448755-126450709:+
Coord C1 exon
chr10:126448755-126448934
Coord A exon
chr10:126448935-126450563
Coord C2 exon
chr10:126450564-126450709
Length
1629 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
GTTCTCCTCACCCCATTCAGGGG
3' ss Score
7.8
Exon sequences
Seq C1 exon
GGCGGGACTTCCAGGAAGGGAAACGAGGAGCCGGACCCTCCAGTAAGGCTCTTCCAGATCCACGGGAACGACAAATCCAACACCAAAGCAGTGGAGGTCTCGGCCTCTGCTTCCTCGCTCAACTCCAACGACGTCTTTCTGCTGCGGACTCAGGCAGAGCACTACCTGTGGTACGGCAAG
Seq A exon
GTGAGAGTGCTGCTGGGTCCTACTAGTTGGTCAGTTGGGAGTCACGACTGCCCTGGCTCCACCCTCAGCCCTCAGTAATGCAGAAGTACACCCAAGTTCAATCCCCAGAAACACAAAAGTCAGAAAATGGGAACTCCTATCTGTAACCCCAGAGCACACACACACGTAGGTACACTCACATATGCACTTATGTACACACATCTACATACACACACAAACATACCCACACATACACACACACATTTGTACACTCACATACAAACACATACACACATATGTACGCACATCTACGTACACATACACAAAATCCTGGAGCTGGAGAGATGGCTCAACAGAGATGCCACCTGCAGAAGACCTGGGTTCAGGTCCCCCACGGTGGCTCACAACCATTTGTAAACCCCATTCCAGGGGATCTGACACCCTCTTTGACCTCCAGAGGCACTGCACACACTTTGAGCACACACCTACACACACATACATGTGGATAAAACACTCATGCAAGTAAAATAAATCTTTAAAGAGCACCAGTGAACGAAAACTTCCTTACACAAAGATTTGTATACACATGTGCGCAGTAGCAATGTTTATTCACAATCCCCTCAAATTAGATGCGATCTGGAAAAATAGATGAAATTCAAAAATAGTAATATTCCTTCAATGGAATATTACTCAGCACTAAAAATGGAAGGGCCACTCATGCACACAACACAGAGTCTCCAGGTGACAAGAGTCTCCTGAGAACTGAAAGACGGTCTCCCAGGCTGGATGTGACAAGCTTCCACTTGAGAAATGCCAGGAATGTTCTAATGGAGCACAGCTTAGCCTATGTCAAGAGTTCAGGACTCAGGGCTTGACGTCAAAGGGAGAGGAATTGAAGAGGACTAAAGAAATTTCACTGTGGGAACAGAGATCTGTTTAAGCCTTGTGGAACCCAACAGTCAGGTTTACTGTAATTAAAAAAAATAAGACTAGGGGTTGGAGAAATGGCTCAGTGGTTGAGAGCACTGACTGCTCTTCCTAAGTCCTGAGTTCAAATCCCAGCAACCACATAGTGGCTCACAACCACCTGTAATGGGATCTGATGCCCCCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACTTACATATAACAATAAATAAATCTTAAAAAAAAAAAGAAAAAAAAAAAAGACTAAAGCTGGGCGGTAGTGACACACACCTTTAATCTCAGCACTCAGGAGGCAGAGGAGTCTCAGAGTTTGAGAGCATCCTGAGTTCCAGGACAGCTAGTGCTTCACAGAGGAATCCCGTCTCCAAAAAACAAACAAAAACAAAACAAAACAAAAATAATGAAAGTTACATGCTAGGGATACAGGGCTTGCTTGTTACAGAGGCAGAGCCTTTACTGTGCATGTGCATCAGAGGAAACTGTGTGCTAGAATCCAGGTGAGGCTAAATCAGAGACGGCTTCTGCGTCGGCGCACTGTGGGTTTCAGAGCAGGCCTGTCCTTTGCCTGCATGTCCTGTCCTCCCCCCATCCCCCATCCTGGGGCACGGCAGCACAGAGCCAACCCCCAGTTTCAGAAGCCTGGCATCCCTACCAATGTGCCCTGTGCCTCTAACACCTGTGTTCTCCTCACCCCATTCAG
Seq C2 exon
GGGTCTAGTGGGGACGAGCGGGCGATGGCTAAGGAGCTGGTCGACCTTCTCTGTGATGGCAATGCGGACACTGTGGCTGAGGGCCAGGAGCCACCTGAGTTCTGGGACCTTCTGGGAGGAAAAACAGCCTACGCTAATGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-Avil:NM_009635:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.367 A=NA C2=0.122
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
NA
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCCAGGAAGGGAAACG
R:
GCGTAGGCTGTTTTTCCTCCC
Band lengths:
310-1939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: