RnoINT0024206 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70302536-70304146:+
Coord C1 exon
chr7:70302536-70302715
Coord A exon
chr7:70302716-70304000
Coord C2 exon
chr7:70304001-70304146
Length
1285 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGA
5' ss Score
9.45
3' ss Seq
GTGCTCTCCTCACCCCTCAGGGG
3' ss Score
9.74
Exon sequences
Seq C1 exon
GGCGGGACTTCCAGGAAGGGAAATGTGGAGCCTGACCCTCCAGTAAGACTCTTCCAGATCCACGGGAACGACAAATCCAATACCAAAGCAGTGGAAGTCTCGGCCTCCGCTTCCTCCCTCAACTCTAATGATGTCTTTCTGCTTTGGACTCAGGCGGAGCACTACCTGTGGTATGGCAAG
Seq A exon
GTAGGATGGCTGCTGGGGTCTACTAGTTAGTCACGACTGCCCTGGCTCTGCCCTCAGCCCTGTCAGCAAGACAGTAAAGAGTAGTACACCCAAATTCAACCCCAGCAACACAAAAGGCTGTACGTGGAAGCTATACACACACACACACACACACACACACACACACACACACACACACACACACAATCCTATCTCTTTAGGGGCTGGAGAGATGGCTCAACAGAGATGCCTCCTGCAGAAGACCTGGGTTTGGTTCCCACATGGTGGCTCACAACCATTTGTAAATCCTGTTCCAGTATCTGGCACCCCCTTTGACCTCTATGGGCACTGCACACACTTGAGGGCACATACCCATACACATACATGTGGACAAAACACACAAGTAAAATCAATCTTAAAAAAAGCACCAGTGAACAAAAACCTCCTTACACAAAGAGTTGTACCCGCTATGCACATGCATTCACAATCCCCTCAAATTAGAAGCGATCTGGAAAATAGATAAACGTGGATATACCCATTCAATGGAATATTACTCAACAGTAAAGATTGAAGGGCCACTCATGCACACAGTACGGAATCTCCAGTTCCTGTCAAGTGAAAGAATCCATCTCCAAGGCTGGATGTTACATGCTTGCACTTAAGACAGAAACAGCAGGACTGTTCTAATGGAGCACAGCTTAGCATATGTCAAGAGTGCAGGACTCAGGGCTTGACTTCAAAGGGGTAGGAATTGGGGGAGGACTAAGGAAATTGCACTGTGGGGACAGAGATCTGTTTAAGCCTATGGATCCCAACAGAGTCAATGTTACTGTAATTTAAAAAATGTGGATGAAGCTGGGTGGTGGTGGCACACGCCTTTAATCGTAGAACTCAGGAGGCAGAGGCAGGGGGATCTCTGAGTTTGAGACCAGCGTAAGTTCCAGGGCAGCCAGTGCTTCACAGAGAAATCCTTTCTCCAAAAAACAAACAAAAACAAAACAATAATGAAAGTTCATGGCAGGCTCGTGGGATATGGGATATGGTGCTTGCCACAGAGGCAGAGCATTTACTGGGAAAGTGTGTGCTAAAATTCCAAGCGACGCTAAAACAAAGGTGATGTCTGCATAGGAGCACTGTGGGATTCAGAGCAGGGCAACCCTTTGCTTGCATGTCCTGTCTTCCTCACTCTCCCCATCCTGGGGCACTGCAGCTCAGAGCTGACCACCCCCAGTTTCAGAAGCCTGGCGTCCCTATCCCTGTGAGTGTGCCCTGTGTCTCTGACACCCGTGCTCTCCTCACCCCTCAG
Seq C2 exon
GGGTCAAGTGGGGACGAACGGGCGATGGCTAAGGAGCTGGCAGAGCTTCTCTGTGATGGTGACGCAGACACTGTAGCTGAGGGCCAGGAGCCACCTGAGTTCTGGGACCTTCTGGGAGGAAAAGCCCCCTACGCTAACGACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.350 A=NA C2=0.204
Domain overlap (PFAM):
C1:
PF0062617=Gelsolin=PU(48.6=56.7)
A:
NA
C2:
PF0062617=Gelsolin=PD(48.6=69.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCGGGACTTCCAGGAAGG
R:
CTTTTGTCGTTAGCGTAGGGGG
Band lengths:
326-1611
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]