BtaINT0024429 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016913 | AVIL
Description
advillin [Source:HGNC Symbol;Acc:HGNC:14188]
Coordinates
chr5:55998647-55999724:+
Coord C1 exon
chr5:55998647-55998715
Coord A exon
chr5:55998716-55999607
Coord C2 exon
chr5:55999608-55999724
Length
892 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TACATTCTTATCTTCCCTAGGAT
3' ss Score
10.05
Exon sequences
Seq C1 exon
GCAGGGAAATCATATGAACAGTTAAAAGAAGAGCTGGGAGATGCTGTTGCTATCACAAGAATCACTGCT
Seq A exon
GTAAGTTTCTTGGAGGAGCTATTCACAGGCAACCAGAGCCAGAAAGAAACAGCAGATGCTGCAGACACAGCATGGCTGAAACCCTATCATGTCCTTCTCAGTATCACTCTGATGGTCTAATGTGATGTGAAGATTGTTTTAATCGGTAGAAAGAGCAGGCTTCAGAGCCGAGTTCCTTATTTTACTTCCTTCCAGAATTTAGAACAGACTTGCTGTTACCAAATCGAATTATTCAACTCTGTCACTCAGGAGAGATTAAATTAACTAGTAGTATTTTTCAGAAATAATAAGCTTGTAACCCAGGTGACACTATTAGTTTCTGACAGTGGCATCCACAGAAACTCAGGCCATTACCCCTGTTTTAACGGCCCCCAGAAGTGGAGCTCCCGGCCGAGAACCCAGCAGCTCTTTAGCATCAGGACAGTGCACAGCACCACTGTCCAAACCATCTGGTGTTTTGCTGTTTGTGCTCTACAAACTCAAGATTTCAAAACTCATGGCAACGTAGCATCTTTAAAATGTATTTAAGAGAAATATGACTTCAATTTGAAACCATCTCAAGGCCAGAAATGTAGAGCCCAAGTAAAAGTACCAAGAGAAGGGATGTGATCACAGTATTTAAGTGAGATTTATGCAAAACATTTACGCCAACTGACTATACAGGATTTACCTTAGACTCACTGAATCAGCTTCTCAAGAACCCCCAAACTAAACTATTTTAGATTTCCAGATGACTCTGACATGCAGCCAGCATAGGGGACCACTGTTCTAAAAGATGATTATAAAGCATGAAGTGGTTAAAAAAAAAAAAAATTTAATGTTATAAACATAGAACTTCAATTGCACAGACCTGAGTGGTCTTTTATTGTGTCTACATTCTTATCTTCCCTAG
Seq C2 exon
GATATGAGAGACACAACCCTTGCCCTGAATTCTGAGCCAAAATATTACCCCCTAGAAGTTCTGTTGAAAAATCAGAGTCAGGAGTTGCCAGAGGATGTGAACCCTGCCAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016913:ENSBTAT00000022497:17
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.205
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGGAAATCATATGAACAGTT
R:
TCCTTTTTGGCAGGGTTCACA
Band lengths:
185-1077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]