MmuINT0022339 @ mm9
Intron Retention
Gene
ENSMUSG00000025432 | Avil
Description
advillin [Source:MGI Symbol;Acc:MGI:1333798]
Coordinates
chr10:126454020-126455567:+
Coord C1 exon
chr10:126454020-126454088
Coord A exon
chr10:126454089-126455441
Coord C2 exon
chr10:126455442-126455567
Length
1353 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
TGTGTTCCTCTCTTACACAGGAC
3' ss Score
10.69
Exon sequences
Seq C1 exon
GAAGGAAAATCATATGAGCAGCTAAAGAACGAGCTGGGAGATGCAACTGCCATTGTGCGAATCACCGCT
Seq A exon
GTGAGTCCGGTTCACTCTTAAAGGAGAGAGAGGGTGCAGCAGATGCCCTCATGGTTCTTTTAAGAATAAAAAGAAAAGAAAGAAAGAAATTAAGAAAGAGAGGGAGGGGAGAGAGGGGAGAGAGGGGAGAGGGGAGAGAGGGGAGAGGGAGGAGGGAGGAAAGGCGGAGGGGGGTGAAGAAGAGGGAAAAGCAGGTCTCAGAGCCAAGTTCCTAATTTACTGCATTCCAGAACACAGTAGGTATGTGGGGGAGGGGGTTGTCGAGCTGGCTCTGCAGCTAAGAGAAGCCCCTGTGTTGGATAGCTCACAGGAGACCCTAACTACAGCTCCAGAAGTGTGTATTCCTCTGGACTGTAAGTGCACCCACACTCCTGTGCACACATATCCCCCCATATACATAATGTACTAACTAAATTAAAGAGTTTAAGGTCATCCATGTTACATATTGAGTGGAGGGCCAGTCTGGGCTATATGTGACCCTGCCTCAAAAAAGGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGAAAAGGGAAGGAAAGGAAAGGAAAGAAAAGAAAGCAAAAGAAAAGAAAGCAAAAGAAAAGAAAGAACAATAAGAACAAAACCTAACTTTATTACTCAGCCTTTTAGGATTATTGTTGGTATTCCTCAGGCACAAGCCTCTAACCCAGATGATATTTTACTAGTTTCTTATGGTGAAATCCACGGCGTTTTAGGCCACGGACCCCTATTTTAACAGGTACAAGTGGAGCTTGTGGCCAGCAGCGCTTGGAATGACAGGATAGGATTCATGACACAGGGAGGTCCAACATTTACACATTGTCCTCTGTGCTCTGCTAACCCAGGTCCCAAAGCTAATGGGATGCCATTAGTGTCTTTAAAGTATATTTAAGCATAGCTTCAGTCTGAAAGCATTTAACAACTGAAAACGTAGGACCTGGATAAAAACCCCAAAGGATGGGATATATATGATCACAGTACTTGAAAATGACTTCCAGCAAGAGGTAGACAGCTCAGTGGCACCTGCCCAGGATGCACGAGGCTTTGGCTTCAGTTCCCAGCACTACACAAACACACATCTATATGTAATGCATGGTTAGACCTAAGTGTAGTGTGCACGCAGATCTGGCCCTAAAGGCTCACACTGGACCTGCTGAATCAGCGTCCCCAGGTTTGTCAGGCATCCAGGTTTAGGGACCACCGTTCTGAAAGATGTTCACAAAGGATGCAGAGGCACAAGCCAAAGTGTAAATCTTATACACGCAGGGAACTGAGGCCACACGAAACATCGCTCTACCTATCTGTGTCTGTGTTCCTCTCTTACACAG
Seq C2 exon
GACATGAAGAACGCAACACTTTACCTGAATCCTAGTGACGGTGAGCCAAAGTACTACCCGGTGGAAGTTCTGCTGAAAGGTCAGAACCAGGAGCTGCCTGAGGATGTGGACCCCGCCAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025432-Avil:NM_009635:18
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAAATCATATGAGCAGCTAAAGA
R:
CTTTTTGGCGGGGTCCACATC
Band lengths:
190-1543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: