RnoINT0024210 @ rn6
Intron Retention
Gene
ENSRNOG00000050419 | Avil
Description
advillin [Source:RGD Symbol;Acc:620301]
Coordinates
chr7:70306516-70308148:+
Coord C1 exon
chr7:70306516-70306584
Coord A exon
chr7:70306585-70308022
Coord C2 exon
chr7:70308023-70308148
Length
1438 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
TCCGTTCTTCTCTTACACAGGAC
3' ss Score
10.24
Exon sequences
Seq C1 exon
GAAGGAAAATCATATGAGCAGTTAAAGAACGAGCTGGGAGATGCCACTGCTATCGTGCGAATCACCACG
Seq A exon
GTGAGTCCGGTTCGCACTTAGGAAAGAGAGAGAGTCTGGCAGATGCCCTCGAGTCTTTAAGAACTCCTCCAGTTGTCTACTCGGACGCAGAGGGCTTTTGTTGTCTGTTGTGTTGTGTTCTGTCTGAGGTGCAAACTAGTGAAGCTCTCTACCATTGAATTGCACCCATTCTTGGAGGTCATTTTAAGTAATAGAAAGCAAGTCTCAAGCACTTGAAAAGCAAATGTGGGAGAGTTGTGAGTTCTAGGCCAGGCTAATCTACGTAGCAAGACCGCAAGGCCTCCGTCTCAAGGAGGGAGGGAGGGACGGAGGGAGGGAGAGAGAGAGTGTGTGAGGGGAGGTGAAGGAGGGGGAAAAGCGAGTCTCAGAGCCAAGTTCCTAATTTACTGCATTCAGAACATGGTAGGTATTTGGGGGAGGGGGCTGGAGAGCCAGCTCTGCAGCTAAGAGTGACTGCTGCTCTATCCATTCCAAACACCTGTGTTGGGTGGCTCACAAGAGACCGTAACTACAGCTCCAGAAGTATGTATTCCTCCGGTTTGCAAGAGCGCCCACACTCATGTGCACGCAGATCCCCCCCTATATATAATGTACTAAATAAACTAAAGAGCTTCAGGTCATCGTGCTACATATTAAATGGCGGACCAGCCTGGGCTATATGAGACCCTGGCCCAAAAAAGAAAAAAACAAAAACAAAAACAAAAACAAAACTAGAAAGAACAGTAAGAACAGAACCTAACTTTATTACTCAACCTTTTCTGCTTTCCAGAGAGATTAGGATTATTGTTAGCATTCCCAGGTACAAGCTTCTAACCCGGATGATATTTTATTAGCTTCCGACAGTAAAATCCACAGCAGCTTAGGCCACTGACCCCCTATTTTAACAGCTATAGTAAGTAGAGCTACAGCCAGCCGCGCTGGAATGACAGGACGGGATGCATGGCACAGGGAGGTCCAACATTTACAAGCTGTCCTCTGCATGCCGCTAACTCGGATCCCAAAGCTAATTGGATGCCGTTAGTGTCTTTAAAGTGTACTTAAGCGTGGCTTCAGTTGGAAGGCATTTAGCGACTGCAAACTCAGGACCTAGATAGAAACTGGAACAGAAGGGATACAATCATAGTATTTACAGGTGTACAGCTCAGCCGCAGAGTGCCGGCCTAGCACACGGAGGCTTTGGCTTCAGTTCTCAGCACTACATAAGCAAACGTTTGTACATAATGCATGGGAGGACATAAGTGCAGTCTGGCTCTAAAGCCTCACACTGGACCTGCTGAGTCAGCTTTCCCAGGTTTGTCATGCATCCAGGTTTAGGGACTGCCTGAAAGATGTTCACACAGGATGGAGCAGCATAAGACAAAGTGTAAACCTTATACACGCAGGGAACCGAGGCCAAGCAAAACATCGCTCTACCCACGTCCGTTCTTCTCTTACACAG
Seq C2 exon
GACATGAAGAACGCAACCCTCTCCCTGAATTCTAGTGAAAGTGGGCCAAAGTACTACCCTGTGGAGGTTCTGCTGAAAAGTCAGGACCAGGAGCTGCCTGAGGATGTGGACCCCACCAAAAAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000050419:ENSRNOT00000073237:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.286
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCAGTTAAAGAACGAGCTGG
R:
CTCCTTTTTGGTGGGGTCCA
Band lengths:
182-1620
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]