BtaINT0024978 @ bosTau6
Intron Retention
Gene
ENSBTAG00000005676 | BAT8
Description
Bos taurus euchromatic histone-lysine N-methyltransferase 2 (EHMT2), mRNA. [Source:RefSeq mRNA;Acc:NM_001206263]
Coordinates
chr23:27285124-27285437:+
Coord C1 exon
chr23:27285124-27285230
Coord A exon
chr23:27285231-27285314
Coord C2 exon
chr23:27285315-27285437
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
CCAACAGCCCCTCCGTGCAGGCT
3' ss Score
5.37
Exon sequences
Seq C1 exon
TGGACAACCTGGACCCCAACTTCCAGAGTGACCAGCAGAGCAAGCGCACACCCCTGCACGCGGCTGCCCAGAAGGGCTCTGTGGAGATCTGCCATGTGCTGCTGCAG
Seq A exon
GTCAGCATGGGCCCCGCCTGGGACCACAGCACCCACCCCACCCCGACCCAGCCCCTCCCTGGTGCCAACAGCCCCTCCGTGCAG
Seq C2 exon
GCTGGAGCCAACATCAATGCCGTGGACAAGCAGCAGCGGACGCCGCTGATGGAGGCCGTGGTGAACAACCATCTGGAGGTGGCTCGCTACATGGTGCAGCGTGGGGGCTGTGTCTACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000005676:ENSBTAT00000007456:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(36.8=100)
A:
NA
C2:
PF127962=Ank_2=FE(42.1=100),PF127962=Ank_2=PU(6.8=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTGACCAGCAGAGCAAG
R:
GCCACCTCCAGATGGTTGTTC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]