DreINT0009787 @ danRer10
Intron Retention
Gene
ENSDARG00000102325 | EHMT2
Description
euchromatic histone-lysine N-methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr19:1344871-1345395:-
Coord C1 exon
chr19:1345289-1345395
Coord A exon
chr19:1344994-1345288
Coord C2 exon
chr19:1344871-1344993
Length
295 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAAA
5' ss Score
2.44
3' ss Seq
TGTGCTTCTGCTGATTTTAGGCA
3' ss Score
8.54
Exon sequences
Seq C1 exon
TGGAGGGTATGGACCCATCATATCAGTCAGACTCTCAGAACCGGCGCTGTGCTCTTCACGCCGCGGCTCAGCGAGGTCTGCTGGAGATCTGCTATCTGCTCGTACAG
Seq A exon
GTCAAACTTACACACAAACACTGCACTATACACATTTACACACACACTGCACTACTCAACATCCTTAAACAAGTTCTGGATCACTCACAGTGTCTATGTGTAATATTTTAACACAGAACCATTGCTCTATTAAATATATCTATAAATATAACTCATATTACTATCGCTGATACTGATCGTCTATTAGGTTTCTGGAAGCGAATCTCCTTGTCTGTATTTACTGAAATTAAAATGCTGACAGGAAAATAATATTGAATAAAATAATTATATCTGCATGTGCTTCTGCTGATTTTAG
Seq C2 exon
GCAGGCGCTAAAGTGGACGCCCAAGACAAGAGCCTGAGGACCCCGCTGTTAGAAGCCATAGTGAACAATCATGTGGATGTAGTGAAATACCTGATCCAGAGCGGAGCCTGCGTCTATCACGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102325:ENSDART00000168138:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.139 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(36.5=100)
A:
NA
C2:
PF127962=Ank_2=FE(41.7=100),PF127962=Ank_2=PU(5.5=9.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGACCCATCATATCAGTCAGACT
R:
CGTGATAGACGCAGGCTCC
Band lengths:
220-515
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]