MmuINT0055998 @ mm9
Intron Retention
Gene
ENSMUSG00000013787 | Ehmt2
Description
euchromatic histone lysine N-methyltransferase 2 [Source:MGI Symbol;Acc:MGI:2148922]
Coordinates
chr17:35044276-35044589:+
Coord C1 exon
chr17:35044276-35044382
Coord A exon
chr17:35044383-35044466
Coord C2 exon
chr17:35044467-35044589
Length
84 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CCTTCACACTGTCCTCACAGGCA
3' ss Score
9.38
Exon sequences
Seq C1 exon
TAGACAACCTGGACCCCAACTTCCAGAGCGACCAGCAGAGCAAGCGCACGCCCCTGCACGCGGCCGCCCAGAAGGGGTCGGTAGAGATCTGTCATGTGCTGCTGCAG
Seq A exon
GTCAGTCCTCATGACCCTTCCCACTGTCCAACCCCTCCCCAGCATCCCCTCTCCCTGGTGCCAGCCTTCACACTGTCCTCACAG
Seq C2 exon
GCAGGAGCCAACATCAATGCCGTAGATAAGCAACAACGCACGCCACTAATGGAGGCCGTGGTGAACAACCACCTGGAGGTGGCACGCTACATGGTGCAGTTAGGTGGCTGTGTCTACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000013787-Ehmt2:NM_147151:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.372 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(36.8=100)
A:
NA
C2:
PF127962=Ank_2=FE(42.1=100),PF127962=Ank_2=PU(6.8=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCTGGACCCCAACTTC
R:
GTTCACCACGGCCTCCATTAG
Band lengths:
171-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: