HsaINT1012305 @ hg38
Intron Retention
Gene
ENSG00000204371 | EHMT2
Description
euchromatic histone lysine methyltransferase 2 [Source:HGNC Symbol;Acc:HGNC:14129]
Coordinates
chr6:31886775-31887101:-
Coord C1 exon
chr6:31886995-31887101
Coord A exon
chr6:31886898-31886994
Coord C2 exon
chr6:31886775-31886897
Length
97 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
3' ss Seq
GCCCTCCTGCCCCCTCACAGGCT
3' ss Score
9.96
Exon sequences
Seq C1 exon
TGGACAACCTGGACCCCAACTTCCAGAGCGACCAGCAGAGCAAGCGCACGCCCCTGCATGCAGCCGCCCAGAAGGGCTCCGTGGAGATCTGCCATGTGCTGCTGCAG
Seq A exon
GTCAGCACGGGCCCGGCCCCATGCCTCATTCACCAGGCCCTTAGGCCCCTCCCCTGCCCCATGCCTCCCTGGTGCCAGCCCTCCTGCCCCCTCACAG
Seq C2 exon
GCTGGAGCCAACATAAATGCAGTGGACAAACAGCAGCGGACGCCACTGATGGAGGCCGTGGTGAACAACCACCTGGAGGTAGCCCGTTACATGGTGCAGCGTGGTGGCTGTGTCTATAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204371:ENST00000375537:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.360 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF127962=Ank_2=PU(34.8=95.8)
A:
NA
C2:
PF127962=Ank_2=FE(42.1=100),PF127962=Ank_2=PU(6.8=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCTGGACCCCAACTTC
R:
TTGTTCACCACGGCCTCCATC
Band lengths:
173-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains