RnoINT0053573 @ rn6
Intron Retention
Gene
ENSRNOG00000030630 | Ehmt2
Description
euchromatic histone lysine methyltransferase 2 [Source:RGD Symbol;Acc:1302972]
Coordinates
chr20:4585843-4586164:+
Coord C1 exon
chr20:4585843-4585949
Coord A exon
chr20:4585950-4586041
Coord C2 exon
chr20:4586042-4586164
Length
92 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
3' ss Seq
CTTCCTGCTCCTCCTCACAGGCA
3' ss Score
11.65
Exon sequences
Seq C1 exon
TCGACAACCTGGACCCCAACTTCCAGAGCGACCAGCAGAGCAAGCGCACGCCCCTGCACGCAGCCGCCCAGAAGGGGTCCGTGGAGATCTGTCACGTGCTGCTACAG
Seq A exon
GTCGGTCGTGGGGACCCTTCCCCGCCTCGCTGTCCAGCCCCCTCCGCAGCATGCCCTGTCCCTGGTGCCAGCCTTCCTGCTCCTCCTCACAG
Seq C2 exon
GCAGGAGCCAACATCAACGCCGTGGATAAGCAGCAGCGCACCCCGCTGATGGAGGCCGTGGTGAACAACCACCTGGAGGTGGCTCGCTACATGGTGCAGCTGGGCGGCTGTGTGTACAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000030630:ENSRNOT00000047370:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.361 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF127962=Ank_2=FE(36.8=100)
A:
NA
C2:
PF127962=Ank_2=FE(42.1=100),PF127962=Ank_2=PU(6.8=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACCTGGACCCCAACTTC
R:
TTGTTCACCACGGCCTCCATC
Band lengths:
173-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]