BtaINT0025062 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57154854-57156177:+
Coord C1 exon
chr5:57154854-57154998
Coord A exon
chr5:57154999-57155524
Coord C2 exon
chr5:57155525-57156177
Length
526 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
CTCTTCCCTTTGCTTTACAGTTC
3' ss Score
10.47
Exon sequences
Seq C1 exon
CGTCAGCTCTTCTTTCGAAAAAAGCTGCTTCACTCATCCCAGATGCTTCGAGCAGTCTCCTTGGGTCAGGACCGCTACAGACGCCGCTACTGGGTGTTGCCCTACTTGACTGGTATCTTTGTGGAAGGAACAGAGGGAAGCTTAG
Seq A exon
GTAGGTGTGTCGTAGGACCCTGGGTTGAGACCCAGCTCACAAAAGTTAAGCAATTCCTTTTCTCTACCTAGCATCTTGGGCTTTTTTGATTGTATGACAGTCAGTTTAGCATACTGTGGTTAAGAGCACAGTATGCTCTGGAGTAAGACTGCCTACCTTCTGCTCTGCCATTTACCAGCGATATGCTTCAGTTTTCATTTGTGAGATGGAATTAATAATAGAATGTATATGTCATAGGGCTATTGAGGGGATTAAAGTAACTTAATAGAATAATAACTTAGAATAACGTGTAACATAGCTGGTTCTCAATAAATGTTAGCTTATGTTTATGCTGATAATTACTTGGGAACATAGTTTTTCTTTTGCAGATACTATGCTGGTTGCCATATAAGAATTTTCCAGTGCAATCTCAAAAAGTGGGGGATTAAGTCCAAGAGAAAAAGAAAGTATATGTCCTGTGTTTGTACACCCTCTTTCTTTCCCATTATGTATCAGTGTGTCTTATGCTCTTCCCTTTGCTTTACAG
Seq C2 exon
TTCCTGAGGATGTGATAAAACAGGAAACTGACTCCTTAAAAGTGGCAACCCATTCAACAACCAGCCCAACCTCCTTCTCTCTGAAGAGGGAGTTAGCTGGCTCCAGCACCTCTGCCAGTTCTCCTGCCCGGGCCCGAGGCCGACCTCGGAAAACTAAGCCTGGCTCTATGCAGCCTAGGCACTTGAAATCTCATTCCAAGGGTCAAGGTTCAGAAGAGCCTCAGACCCAGCTTCAGCCTGAGACTCAGTCCCATCCTCAGCTTCAGGCTCATGCCCAGCCCCAGCTTCAGTCCCATCCTCACACTCATAATGGGTTCCTGGAGCCAGAAGGCTCCCCATTGTCTCTGGGTCAGAGCCAGCATGACCTCAGCCAGTCAGCCTTCCTGTCTTGGCTGAGCCAGACTCAGAACCATGGCTCCCTGCTGAGCAGCTCAGTCCTCACGCCTGATAGCAGTCCCGGAAAACTGGACCCAGCCCCATCACATGCCCCAGAGGAGCCAGAACCTGACGAGACAGAAGCCAGCCCTGATTCTCAAGCTCCCTGGTTTAATTTCTCAGCCCAGATGCCCTGCAATGCTGCCCCTACACCACCCCCTGCAGTTTCTGAGGACCAGCCCACTCTTTCCCCTCAGCTACCTGCTTCTTCCAAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840:ENSBTAT00000038215:20
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.061 A=NA C2=0.991
Domain overlap (PFAM):
C1:
PF156131=WHIM2=WD(100=61.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCATCCCAGATGCTTCGAGC
R:
CTGGGTCTGAGGCTCTTCTGA
Band lengths:
343-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]