HsaINT0016800 @ hg38
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56601546-56602857:-
Coord C1 exon
chr12:56602713-56602857
Coord A exon
chr12:56602193-56602712
Coord C2 exon
chr12:56601546-56602192
Length
520 bp
Sequences
Splice sites
5' ss Seq
TAGGTAGGT
5' ss Score
7.92
3' ss Seq
CTCTTTACTTCTCTTTACAGTTC
3' ss Score
10.82
Exon sequences
Seq C1 exon
CGTCAGCTTTTCTTTCGCAAAAAGCTGCTTCACTCATCCCAGATGCTTCGGGCGGTCTCCCTGGGTCAGGACCGCTACAGACGTCGCTACTGGGTATTGCCGTATTTGGCTGGTATCTTTGTAGAAGGAACAGAGGGGAACTTAG
Seq A exon
GTAGGTGTGCCTGTGGGAGTGTGGATTCTGAGTCCTATCAAACAAGAATTAAATAATTCCTTTTCCTTAGTAGTCTTGGGCTTCTTTCATTTTCTGATAATATAGCGTAATGGTTAAGAGCACAGATTTTAGAGTAAAGCTGCCTACCCACCTGCTCTGCCATTTCCAGCTGTATGATTCTGTTTCTTCATTTGTGAAGTTGAGATAATAATAGTGTATGTACTTCATAAGGCTACTGAGAGGATTAAAATGAGTTAAGTCTCTTAGAATAATACTTAACCCGTAGTTGTTTCGCAATAAATGTTAGCTTATGATTGTGCTGCTGCTGCTGATTACTTGGGAGAATAGTGTTTCTTCCCCAGATACTGTGTTCATTGGCATATAAGCTCTTCCCAGTGGAATCTCAAAAAAGGGGGACTAAGTCCAAGAGAAAAAGAAAGTATAGGTCCTAAGTTTATATACCCTCTTACTTTTCCCTTGTATGTCAGCATATGGCTTAACTCTTTACTTCTCTTTACAG
Seq C2 exon
TTCCTGAGGAGGTGATAAAGAAGGAAACTGACTCCTTAAAAGTGGCAGCCCATGCGTCACTCAACCCTGCCCTCTTCTCTATGAAGATGGAGTTAGCTGGCTCCAACACCACTGCCAGTTCTCCTGCCCGGGCCCGAGGCCGACCTCGAAAAACTAAGCCCGGGTCTATGCAACCTAGGCATCTTAAGTCCCCTGTCAGGGGTCAGGATTCAGAACAGCCCCAGGCCCAGCTTCAGCCTGAGGCTCAGCTTCATGCTCCTGCCCAGCCCCAGCCTCAGCTTCAGCTTCAGCTTCAGTCCCATAAGGGGTTCCTGGAGCAAGAAGGCTCCCCTTTGTCACTGGGTCAGAGCCAGCATGACCTCAGCCAGTCAGCCTTCCTGTCTTGGCTGAGCCAGACTCAGAGCCATAGCTCCCTGTTGAGCAGCTCAGTCCTCACACCTGATAGCAGTCCGGGAAAACTAGACCCAGCTCCATCACAACCCCCGGAGGAGCCAGAGCCTGATGAGGCAGAATCCAGCCCTGATCCTCAAGCACTCTGGTTTAACATCTCAGCCCAGATGCCCTGCAATGCTGCCCCCACACCGCCCCCTGCAGTTTCTGAGGACCAACCCACTCCCTCCCCTCAGCAGCTTGCCTCCTCCAAGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108:ENST00000551812:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.903
Domain overlap (PFAM):
C1:
PF156131=WHIM2=WD(100=61.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCTTCACTCATCCCAGA
R:
TGGGGCTGTTCTGAATCCTGA
Band lengths:
346-866
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development