RnoINT0024802 @ rn6
Intron Retention
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2543430-2545161:+
Coord C1 exon
chr7:2543430-2543574
Coord A exon
chr7:2543575-2544499
Coord C2 exon
chr7:2544500-2545161
Length
925 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTCTGTGTTTCTCTTTCCAGTTA
3' ss Score
11.61
Exon sequences
Seq C1 exon
CGTCAGCTCTTCTTTAGAAAAAAACTGCTTCACTCGTCCCAGATGCTTCGGGCAGTGTCCTTGGGTCAAGACCGCTTTAGACGCCATTACTGGGTCTTACCGTGTCTTGCTGGTATCTTTGTGGAAGGATCAGAGGGGAGTGCAG
Seq A exon
GTAGGTGCAACTGTGGGAGCTTGGGGCGAAGTCCAAACAAAAGTGAGCACTTGCTTCCTTCCTAGTCCTTCTGGGCTTTGACTGAAGAGTCAGGCTACCTCTGCTGTCACACAGCAGCCACATGCTATACTAGATGTACTCCATAAGGCAGCTGAGGACTGGGGCTGGAGAAGGCAGAGGTTAAGATCATGCACTGCTTTTCCAGAGGACCTGAGTTGGGTTCCCAGCACCACACGTCTCACAGCCACCTGTAACTTCAAGGATTCAGTCCCTGTGGCCTCCACAGGCACCTGCACACACATACACATAATTAATTTCTTTCAAAGACTACAAAAAATTATAATGGGTTTATACTCTTTAGTGCTTAATAGACCTTAGGTGTAGCTTCTTGGCAGGTGTTAACACAATATTCTGGGGTTGATCCCAGACATAGAAAAGAGGACTGATCTGAGCATTTTGATGAACACTGACCCCAGAGCTTGGGAGGCTGCAGCAAGAGGCTCTGGAGCTCAAAGCCAGACTGTCTTAGGAAAGAGTGCTCAGCCAGCGTCATTCCTCAGTGAAGACGTTTAAGATTATGCTGTGGTTAGACATCTTTATAGCAAAAGATTCTTCCTGGGAGAGGCAGAGGCCAGGTGATCCTTTGATATCATGGCCAGCCACGGTGACAGACTATCTCAAAACAAACAAATGGTTTCTTCCTCAGATACTCTGTTCATGGGCATGTAAGGGTGATAATCAGCAGATCTGAAAAAGCAAAATTTTTTTTTCCTTTTTTTCTAGCAAGCGCAAGGCCCTGGGTTTGGTCCCCAGCTCCAAAAAAAAAAAAAAAAAAAGCAAGGATGTTCTGTTCATAGACCTCATTCTTCTCCACTCTACAACAGTCTGTGTGTATCAGTCTTATGCTCTGTGTTTCTCTTTCCAG
Seq C2 exon
TTACTGAAGATGGAATAAAGCAAGAAACCGAGTCCTTGATGGAAGCAGTCACTTCAACGCCCAGCTCTGCCCAAGTCTCTGTAAAGAGGGAGCCAACGGGCTCTACCACCTCTACTTCTCCTGCCCGGTCCCGAGGGCGACCTCGAAAACCTAAGCCAGGGTCTCTGCAGCCTCAGCACCTTAAGTCCACCATTAGAGAACATGATTCAGAACAAGCCCAGTCTCAAGCTCACCCAAGAGCTCAGCCTCAGCCCCAGCCTCAGCCCCAGCCTCAGCCTCAGCCTCAGACTCCTATCCAGCCTCATCTTCAGTCAAGTAACGGGTTCCTAGAACCGGAAGGTTCCCCTTTCTCTCTGGGTCAGAGCCAGCACGACCTCAGCCAGTCTGCCTTCCTGTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCTGTTGAGCAGCTCAGTCCTCACGCCTGATAGCAGCCCCGGAAAATTAGACTCTGCTCCATCTCAGTCCTTAGAGGAGCCAGAGCCTGATGAGACACAACCCTGCCCTGGTCCTCAAGGTCCGTGGTTTAACTTCTCAGCCCAGATACCCTGTGATGCTGCTCCTACACCACCTCCTGCAGTGTCTGAGGACCAACCTACTCCCTCCCTCCAGCTGCCTGCCTCCTCTAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881:ENSRNOT00000079383:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.991
Domain overlap (PFAM):
C1:
PF156131=WHIM2=WD(100=61.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTTACCGTGTCTTGCTGG
R:
ATAGGAGTCTGAGGCTGAGGC
Band lengths:
348-1273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]