DreINT0036840 @ danRer10
Intron Retention
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6760507-6763592:-
Coord C1 exon
chr23:6763448-6763592
Coord A exon
chr23:6761130-6763447
Coord C2 exon
chr23:6760507-6761129
Length
2318 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CATCATTACTTTGTGTTTAGCGT
3' ss Score
6.3
Exon sequences
Seq C1 exon
CGTCAGGTGTTTTTCCGCAAGAAGCTGCAGCAGTCGTCTCATTCTATGCGAGCCGTGTCTCTCGGACAGGACCGGTACCGCCGCAGGTACCTCCTGCTTCCATACATGGGATGTATCCTAGTGGAGGGAGCAGAGGATATCTTGG
Seq A exon
GTGAGTGCAAAGTCTAGTATCTTGCACAAATTAAGATATGGGTCTTGTCATATCTGCCACTCTTGCGGTTTTAGCAGTGTCTACACCAGATGCTGTTGTCTGCTTCAAAGTCACCAGTAAAATTGTTCTATTTTTTATATTAGAATCAGTCCACAAACATTGAATATTTGTTTTCAAAATTTGGCGTCAAAAGTTCCATTCACTATACAGTACTGGAAAAACAAAACGTGCTTCTGAAGCATTCTGAATGTGATATAAACTCCCTGAGTCTCTCTGTGTGTATTTATAATCACGTTTTGTTTAAAATGCAAGTGAAACAACTAATAATAAATAAATGCAAATCTGCTGCTCTCGCAAGTAGACCTACACAGTTTGATGAAATTTGTGATTTGTCAATATGCCATAATGTTGATCATTTTTAATAAGAAACATGTCAGTGTAGGGCTGTGCAATTAATCAATTATCCGGTTTCGATTTTGATTTTGGCTTCTAACGATTATGAAAAAACATTCATTAAGATAAACGATCATTCCATCATAAACCGCCGCCTTTCCAGTTGTACACATTTGTTGCTCTGCAAAGCTCAGCTTCACATCAAAATAACTAAAACCATGTGCTGTGATGTATTGTTTGCAGCATGTGATGTGCATCATTCATTAATGTACATTTCAATCATTCGTGTTTTTAAATGCGCTAAAGAGCGCATGCTGTTGTGTGTGCGCGCGCTTAGCCTTGGAGACAAGCAGAGCGCACACATCTAAAGGCATCCTAATGCAGGCGCTTTAATGGGCAAATACATGCACATTTGTGTCAGATCGCGTTGCTTAGTGATTATCCATATTAACCTTCGTTTGTGTAATAAACAAACAAGTTGAAAGACAAGTGAAAGAGAAACCACTAATCAGAACCGCACTGTTTCTAAAGTGACAGCGCGCAATATTCCTGCGGCTGACTATTTTTATTATTAATCAAACAACAAAAGGACAAAATCCCTCACTGCTCTTGACTGAAAGACTTTTTTTACAAGGTGTGCGTGACGTGTCTGAAGAGCGAGGAGGGATGCAGTGGGGAGGGGTGAGAAAAGTGCACAACGTATTTGAGGACCGGGTGGGAGATTATCATATATTTCCGAGCATCCGAGAGTCTCTCTTTATTTGCGGGAGACTCCCGAGACCTCAGTGAGACTAGGGATGTCTGGTATGACCTCCCGCTAGAGGTGTGAACCTATACTGGTCTCACAGTTCGGTTACGATTATCATGCCATCAATTTGGTTTAATTCGATATCTTGGTGCATCGACGATGCTTTCCATACACAGTGTTGTATTTTGGGGGGAGGCTATAACAAGCTGTCTGTATAAACACACAGACACAGCATCACACTGTCTCTCATTCACACACATACACAAACATAGACAGCACCAAACACACACACACACACACACACACACACACACACACACACACACTTAAGCCCTCACAATATGCGTTTAGCCGGGAGAGCTTGTGCTGAGTGGAGAAAAAAAGAAAAAAAAAAAGGCGCAAAAATAAGCACTTTTGCGACGGTCCATTACTGAGAGCTCTGCTCCGTGTGAGCGCTCCCGGCTAAACGCATATTGCGAGGGCTTAAAAGGGAGCAGTGGTCATAATGTTGAGCGAAAAAATAGAAAAAGACAGTTGTGAAACATAACCAGCTTTGTCTTTTTGTAGGAAGCACACTTCAGATCTTTTTAGGGTAAGAGGTTTTTGAGTTATTGCCGCTATAACTGAATGTGTCTGGAATATCGAAAACAAAACCTACTTAATCACGCTCATTTCTGGCGCCCTCCTGGATGTACAGCGCCCTTAGCATTTGCCTATACTGCCTATACCACAGGCACCGAAAAAACAATTAATTTTGACACCCCTACCTCTCGCCCTACTCATAATTCTCTCTTCATCTAGCCGAATGCCTATTACATATCTATAAAACACTGTCATATACCCGGGCTCGGATCATATCGCTTTCTCACTACAATCGATCCGCTCCAGAGTTTGTTTCAATCGAGCTGAGACCACCTCATTCAAGCGATCTCGGAGCGATTGTTTTGGCTCTGATCCGAGCGTGATTGGTGGTTTTACATATGCCAAACAAACCGCACTAACTGGCCAAACAAGACAGGTTCTGAAACAAAAGTGTAGGTTTGAAAGCACCCTAAATCATGGTCCTGTGTGAAAAACTGCTAAAATGTACACTTTTATTGTAAAAAATGTATTAGATATTCATTTAATATGAATACGTTAATAAAGGTATTAATCTCCATCATTACTTTGTGTTTAG
Seq C2 exon
CGTCAGGTGAAGTGACAGTCACTGATGAACCTGTGACTTACGTGAAGGTCATAACTCCAGCAAAAGCTGAGGTTAAAGCGGAACCTCCACTGTCTCCTGGCTTCTGCACATCGTCTTCTCCTCAAGGGTCTCGGCTTTCCCTCACAGATCTGGATGCTCTTCCTGGCGAGGCGTCTCTGATGAGCACCCCCAGAGGACGGGGGCGTCCACGGAAGATCAAACCGGAGGTTGAGCTTCATCTGCGCACCGCCAAGAACCGCCGGCGCCGCCGCAGCAGCAGATCGGCAGGTGAAGATTCAGGCCTGAGTTCTCCGTTGCAGGATCTCCCTCTACCTGCTCTCCAGGCCTCCGTGAAGCAACCGCAGGATGACGAGGCTGACGCTAGTGCACCGATCGTAGCCTCTGGAGCCGGTCAGGGTGAAGACAACAGCCAGCCGGAGGACAGCATGCGGGAGCAGGCAGAGAAACGAGGCCAGTGGTTCAATCTGTTGCCTAAAGAGCCGTGTGATGAAACGTCCCTCTCTCAGCCATGTGAAAACACACCTGCATCCGCTGACGGCGCTCCAGCACCCGTCAATGGTGACCTGCTGACCGCAGATCCAGCACAGCCCCTGAAACAAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974:ENSDART00000157828:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.051 A=NA C2=0.895
Domain overlap (PFAM):
C1:
PF156131=WHIM2=WD(100=61.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]