MmuINT0024120 @ mm9
Intron Retention
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127559362-127560711:+
Coord C1 exon
chr10:127559362-127559506
Coord A exon
chr10:127559507-127560079
Coord C2 exon
chr10:127560080-127560711
Length
573 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TTCTTTGTTTCTCTTCCCAGTTA
3' ss Score
10.06
Exon sequences
Seq C1 exon
CGTCAGCTCTTCTTTAGAAAAAAGCTGCTTCACTCATCCCAGATGCTTCGGGCAGTGTCCTTGGGTCAAGACCGCTATAGACGCCATTACTGGGTATTACCGTATCTTGCTGGTATCTTTGTGGAAGGATCGGAAGGGAGCACAG
Seq A exon
GTAGGTGCAACTGTGGAAGTTTGGGGTGAAGTCCAGACAAAAGTGAGCACTTCCTTCTGCCTAGTCCTCGTGGGCTTTTGACTCTGTGGCGTGGTAGACTAAAGAGTCAAGCTACTCACCTACTTCTGCTGTCACACACCAGCTATAGGCTTCAGTTTCTTCATCTGTAGACTGTGGCCATAGTGATGTAGACATACGTCCTAGGAGAGTGAGAATGGGGCTAGAGAGGCCACAGAGTTAAGAGCATGCGCTGCTTTTCCAGAGGACCTGAGTTGGGCTCCTAGCACCACGTCTCACAACCACCTGTCACCTCAAGGATCCTGTGGCCTCCACGGGCACTGCACACACACACACAGAATTTCTTTCAAAGACTACAAAAAATTAAAATGTTTTGTACTCTTTAGTGCTTAACAGACCTTAGATGTAGCTCCATGCCAGGTGTTAACACAATATTCTGTGGTTGATCCCAGACACAGAAAAGCAAACTTTAAAAAGCAAGCATGTTCTGTTTATAGGTCTCATTCTTTTCCATTATACAACAGTATATCTTATGTTCTTTGTTTCTCTTCCCAG
Seq C2 exon
TTACTGAAGATGAAATAAAGCAAGAAACTGAGTCCTTGATGGAAGTAGTCACTTCAACACCCAGCTCTGCCCGAGCCTCTGTAAAGAGAGAATTAACTGGCTCCAATGCCTCTACTTCTCCTGCCCGGTCCCGAGGCCGACCTCGAAAACCTAAGCCTGGGTCTCTGCAGCCTCAGCACCTTCAGTCCACCATTAGGGAATGTGATTCAGAGCAAGCCCAGACTCAAGTTCACCCAGAACCCCAGCCTCAGCTTCAGGCCCCTACCCAGCCCCATCTTCAGCCAAGTAGTGGGTTCCTAGAGCCAGAAGGTTCCCCTTTCTCTCTGGGTCAGAGCCAGCATGACCTCAGCCAGTCTGCCTTCTTGTCTTGGCTGAGCCAGACTCAGAGCCACAACTCCCTGTTGAGCAGCTCAGTCCTCACGCCGGACAGCAGCCCAGGGAAACTAGACTCTGCTCCGTCTCAGTCCTTGGAGGAGCCCGAGCCTGATGAGGCTCAGTCCTGCCCTGGTCCTCAAGGTCCCTGGTTTAACTTCTCAGCCCAGATACCCTGTGATGCTGCTCCTACACCACCTCCTGCAGTCTCTGAGGACCAACCTACTCCCTCCCTCCAGCTGCTGGCCTCCTCTAAACCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-Baz2a:NM_054078:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.122 A=NA C2=0.972
Domain overlap (PFAM):
C1:
PF156131=WHIM2=WD(100=61.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGCTTCACTCATCCCAGA
R:
CTTGAGTCTGGGCTTGCTCTG
Band lengths:
351-924
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: