BtaINT0025065 @ bosTau6
Intron Retention
Gene
ENSBTAG00000017840 | BAZ2A
Description
bromodomain adjacent to zinc finger domain, 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr5:57156664-57157083:+
Coord C1 exon
chr5:57156664-57156819
Coord A exon
chr5:57156820-57156931
Coord C2 exon
chr5:57156932-57157083
Length
112 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TCTGCCTTCTGTCTTCTCAGACC
3' ss Score
10.85
Exon sequences
Seq C1 exon
AGATGCGCTCTGGCTGGTGGTGGATCCGAGATCCTGAGACATTGGATGCCACGCTCAAGGCCTTGCACCCCCGAGGCATCCGAGAGAAAGCACTTCACAAACACCTAAACAAGCACAGGGACTTCTTACAGGAAGTCTGCCTACGGCCCTCAACAG
Seq A exon
GTAAAATAAATACTTAACCAGCCTCAGCTGAAGAGCCCAGGTCAATTTTGAGCTGCTGCTGTGGATGGTGAACAGTCTGATGGGCTTTTCCCTCTGCCTTCTGTCTTCTCAG
Seq C2 exon
ACCCCATCTTTGAGCCCAGTCAGCTACCTGCCTTTGAAGAAGGGATCGTGAGCTGGACCCCCAAAGAGAAGACATATGAGACAGACCTGGCTGTCCTTCAGTGGGTGGAGGAGCTGGAACAGCGGGTGATCCTGTCTGATCTGCAGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017840:ENSBTAT00000038215:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.132 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF156141=WHIM3=WD(100=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGGATGCCACGCTCAAG
R:
ATCAGACAGGATCACCCGCTG
Band lengths:
258-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]