MmuINT0024123 @ mm9
Intron Retention
Gene
ENSMUSG00000040054 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:MGI Symbol;Acc:MGI:2151152]
Coordinates
chr10:127561163-127561542:+
Coord C1 exon
chr10:127561163-127561318
Coord A exon
chr10:127561319-127561390
Coord C2 exon
chr10:127561391-127561542
Length
72 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
AGACCACTCTCTCTTCCCAGATC
3' ss Score
9.72
Exon sequences
Seq C1 exon
AGATGTGCTCGGGCTGGTGGTGGATCCGAGACCCTGAGACACTGGATGTCCTGCTCAAGGCACTGCATCCCCGAGGCATCCGGGAGAAGGCGCTTCACAAACATCTTAGCAAGCACAAGGACTTTTTGCAGGAAGTTTGTTTACAGCCCTTAACTG
Seq A exon
GTAAGTGAGAGACCTTGACCCAACCTGACCTAGAGAAGCTGCCATCATTTATAGACCACTCTCTCTTCCCAG
Seq C2 exon
ATCCCATCTTTGAGCCTAATGAGCTCCCTGCCTTGGAAGAAGGCGTTATGAGCTGGTCCCCCAAAGAGAAGACGTACGAGACAGACCTAGCTGTGCTCCAGTGGGTGGAGGAGCTGGAGCAGCGGGTTGTCCTCTCCGATCTGCAGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040054-Baz2a:NM_054078:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=NA C2=0.098
Domain overlap (PFAM):
C1:
PF156141=WHIM3=WD(100=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGACCCTGAGACACTGGAT
R:
TCCAAGGCAGGGAGCTCATTA
Band lengths:
167-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: