DreINT0036844 @ danRer10
Intron Retention
Gene
ENSDARG00000102974 | baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:ZFIN;Acc:ZDB-GENE-041010-202]
Coordinates
chr23:6756469-6758162:-
Coord C1 exon
chr23:6758007-6758162
Coord A exon
chr23:6756630-6758006
Coord C2 exon
chr23:6756469-6756629
Length
1377 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
3' ss Seq
GAGTTGGTTTGTTTTTTCAGATC
3' ss Score
8.28
Exon sequences
Seq C1 exon
AGATGGTGAAGGGCTGGTGGTGGATCAGAGAACCAGAGGAGCTGACGGCCATTCTGAGCGCTCTTCACCCGCGGGGCATTCGAGAGAAGATGCTTCACAAACACCTCAGTAAACACATGGAGTATCTAGCCGAGGTCTGCACACGCTCTGTAAACG
Seq A exon
GTGAGTCGGAGACAAATGTGCAGGACTTATTGGTTGCGTCCGAAACTGCCTACTACTCAGTAGGTACTGCATTTGAATTTAAACGTACTACTCTGCCGTTAGAAAAGTACCTTCTATACAGAATGAATGTGAAAAGTATAAATGGAATTCGGATGTATTACATCCGCCATTTTGACAAAGTCATGTGACGTACCTGCGTCATTTGCGTCGCTTAACTCCCATACATGAATTCGCTCGCGGGGCATCATGGGATAGCGCAGCGTGCATGGGATGCGCACTCCAGAATCTCGCCAGAAGTAGTAAGTCATCCAGGTACTTCTCGCATACTGATTTTCGAATTCTATGAATTCGGACATACTACTCTGCTCGCATACTGATTTTAGCGTACTATATAGTATGGAAGTATGCGGTTTCGGACGCAGCCCAATGGAACATCACTAACCTTAAAAAAATCAATCATTTTGAATGTTTAGAGTGTAGTCAAATTAATCCTACAATTTAAGCCTGACCCGATCTGAACTTTCGAGAGAGTACCTAGCACAACAAAAGGGTACCAAAAGGTGGATCGACATGCGCAGCTGAACGCTATTGGTTTTTTAGAGATACGTCACTAGCGCATGTACAAGCTAGTAGAATGAAAACAAAGGAAGCGCCATTTTTAAATGCACAGCTGAAACATTACACCATAATAATATACACTTATAATAACGGGCAATGGTCGACTTGAGCTCAAACAAACCCTATCGTGGACTTGATGAACCTCCACAAAGCCAAGAAGATAAACCTGCTGTCATGTTGTTATTTACGAGGTCGCCTAAAAGTGCTTGTGGTTTCACTTTCTCTAAAGAGTTTGTGAGCTCTCGTGCGTGTCTATATTTGAATAACGAATTTGAGCTGATGATATTAACGTGTGCGTGATTATTGAAGAGCTTCTGACATCTGATCCTTTCAGAAACGAACAAACGAGAGTGCAAAACATCAGATCTGTGTCTGATTTAAGACTACATATGAAAGTGGCATAAATCTGAACTAAAAAGATCAGATTTCATGCGGTTTGGACTGTTCACAATGCCTTTACCTGAGTCACATGTGGACAAAAAAAAATCAGATTCAGGCCACATTTGGCTGCCGTGTGAACGTAGCCTTAGTAACAAACCCAAACCAGATGAGCACAAAAAACCTGTTCATCAAGTTGACGACAAGGTTTGTTTGAGCTCGGGTTGACCATGGCTCGTCATCATATGTGTATATTATTACAGAATAATGTCTCAGTTGTGCATTTAAAATGAAAATGAAAAAGTAGTTTGATGTTGTAGAAGAATAACGCGCACACACCTAATGAGACTTCAGTCTTGAAGAGTTGGTTTGTTTTTTCAG
Seq C2 exon
ATCCGATCTTCCAGATGAAGGTGGAGGACGGGGATGCCCTGCAGGAGGTGAGTAAGCAGGAGTGGCAGGAGCAGGAGCGGGTGCTGCAGCTGGACATCAGTGTTCTCCAGTGGGTGGAGGACCTGGAGCAGAGGGTGGTCGGTGCAGACCTGCAGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102974:ENSDART00000157828:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.046
Domain overlap (PFAM):
C1:
PF156141=WHIM3=WD(100=73.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATGGTGAAGGGCTGGTGG
R:
TCTGCACCGACCACCCTC
Band lengths:
304-1681
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]