RnoINT0024806 @ rn6
Intron Retention
Gene
ENSRNOG00000053881 | Baz2a
Description
bromodomain adjacent to zinc finger domain, 2A [Source:RGD Symbol;Acc:1305037]
Coordinates
chr7:2545617-2546000:+
Coord C1 exon
chr7:2545617-2545772
Coord A exon
chr7:2545773-2545848
Coord C2 exon
chr7:2545849-2546000
Length
76 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGT
5' ss Score
10.65
3' ss Seq
ATGGACTACTCTCTTCCTAGACC
3' ss Score
6.66
Exon sequences
Seq C1 exon
ATATGTGCTCAGGCTGGTGGTGGATCCGAGATCCTGAGACACTGGATGTCCTGCTCAAGGCGCTGCATCCCCGAGGCATCCGGGAGAAGGCGCTTCACAAACATCTTAGTAAGCACAAGGACTTTTTGCAGGAGGTTTGTTTGCAGCCCTTAACTG
Seq A exon
GTAAGTAAGACCTCGACCCCAACCTGGTCTAGAGGAGCTGCTGTGCACAGGCCTTTATGGACTACTCTCTTCCTAG
Seq C2 exon
ACCCCATCTTTGAGCCCAGTCAGCTGCCTGCCTTGGAAGAAGGAATTATGAGTTGGTCCCCCAAAGAGAAAACTTTCGAGACAGACCTGGCTGTGCTTCAGTGGGTGGAGGAGCTAGAACGGCGAGTCGTCCTCTCTGATCTGCAGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053881:ENSRNOT00000079383:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF156141=WHIM3=WD(100=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAAGGCGCTTCACAAACA
R:
CAGCCAGGTCTGTCTCGAAAG
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]