HsaINT0016804 @ hg38
Intron Retention
Gene
ENSG00000076108 | BAZ2A
Description
bromodomain adjacent to zinc finger domain 2A [Source:HGNC Symbol;Acc:HGNC:962]
Coordinates
chr12:56600681-56601098:-
Coord C1 exon
chr12:56600943-56601098
Coord A exon
chr12:56600833-56600942
Coord C2 exon
chr12:56600681-56600832
Length
110 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAAT
5' ss Score
6.06
3' ss Seq
TCTGCCACCTCTCTTCTCAGACC
3' ss Score
9.86
Exon sequences
Seq C1 exon
AGATGTGCTCAGGCTGGTGGTGGATACGAGATCCTGAGATGTTGGATGCCATGCTCAAGGCCCTACACCCCCGAGGTATCCGGGAGAAGGCACTTCACAAACACCTTAACAAGCACAGGGACTTCTTGCAGGAAGTCTGCCTGCGGCCCTCAGCTG
Seq A exon
GTAAATACATTCCTACACCCAGCTTGAGCTGAAGAGCCCAGGATAAGCATTGAGCTGCTGCTAGGGACAACAGCCTGATGGGCCTCTCCCTCTGCCACCTCTCTTCTCAG
Seq C2 exon
ACCCCATCTTTGAGCCCAGGCAACTACCTGCCTTTCAAGAAGGGATTATGAGCTGGTCCCCCAAAGAGAAGACATACGAGACAGACCTAGCAGTGCTTCAATGGGTAGAGGAGCTGGAGCAGCGGGTTATCATGTCTGATCTGCAGATTCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076108:ENST00000551812:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.141 A=NA C2=0.035
Domain overlap (PFAM):
C1:
PF156141=WHIM3=WD(100=79.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTGGATGCCATGCTCAAGG
R:
GACATGATAACCCGCTGCTCC
Band lengths:
253-363
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development