BtaINT0025119 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020654 | BAZ2B
Description
bromodomain adjacent to zinc finger domain, 2B [Source:HGNC Symbol;Acc:HGNC:963]
Coordinates
chr2:37044245-37047999:+
Coord C1 exon
chr2:37044245-37044848
Coord A exon
chr2:37044849-37047938
Coord C2 exon
chr2:37047939-37047999
Length
3090 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGTT
5' ss Score
1.87
3' ss Seq
CTGGTTGAATTTTCTTGAAGGCA
3' ss Score
4.85
Exon sequences
Seq C1 exon
GAACAATATAAACAGACATTCCCAGCTCAGTTAAAGAAACAGGAGTCATCTAAGAGCCTGAAGAAGGTTATTGCAGCTTTGTCAAATCCAAAACCAACCTCTAGTTCACCAGCACATCCAAAACAGACATTAGAAAACAGCAACCCTAATCCATTCTTGACAAATGCACTTTTAGGTAATCACCAACCAAATGGAGTTATTCAAAGTGTCATTCAAGAAGCTCCTCTGGCACTTACTACCAAAACTAAAATGCAGAGTAAGATTAATGAGAACATTGCTACTGCAAGTAGCACCCCTTTTTCCTCACCCGTAAATCTGAGTACAAGTGGAAGAAGAACCCCTGGCAGTCAGACAACTGTCATACCCTCTCCCTCTCCCATACTGCATAGTCAAGGGAAGGAAAAAGCAGTTAGCAACAATGTAAACACAGTGAAAACACAGCCTCACTCTCATCCTGCACAATCTCTAGTGGAGCAGTTTAGAGGAACAGATTCAGACATTCTTAGTAGCAAAGATTCTGAAGACTCCAATGAGGATGAAGAGGAAGATGATGAGGAAGATGAGGAAGATGAGGAAGACGATGACTCTGATGACAGCCAATCAG
Seq A exon
GTTGTTTTCTATTCTTAAGTTTAAAGTGTTTCTCTAAATGCCCTGTGAACCAAAACATTTTAAAGAGGCTCTTCAAATCCACAGATTTGAAATCGCTGTCATTCACCGTTTCATGCAGCTCTGTTCCTTTCTATAGTGAGTGGTAAAGGAAAGGAATAATTGAGATTGAAAGTCCTAAATTAAGTTCTCAGCTTGTTCATTTAACACTAAACAAATAACTTTAAAATGACTGTAAGTAATTCATGAATTAAGAACTTGAGGAACTTGCTTAATTTTCATTTAATTCATGACCACCCATTTGTCCTTTCTTTTTCATCTCTTCTGCTACTTGTTAACTTGTGTCACTGGATATTTTGAAGAAAGGCAAAATTTTACTCAGTCATTCAGAAAATACCCCAAAGCCTAAATCTCTATGAATAGTTCTTAGCAACATAGAATTTATTTAATAACATATATAGAGTACCCCCAATTTTATTTATTTTCTTTTTAATTTCTTGTTTTATTTCCCTTTAACTCTTTTTTCTTGTTCCACAGAAGATTGAAAATATAAAATAGTTTAAAATTTAAATACAAAGATGAGACACGTATTTTTTATAAAAGTTTTTGAATTTGTTCCTCGTCAGCCACGAATCCAATTTTAAATTTTCTATCTACCAATATAAGTAGGAAAATATAATCAATTATACAATTTTTAAAATGACTATAAGGTAAAAACAACCTACTTGCTCAGGGTAAGAACAACTTTTCCTAATAATATATTTTCCTAGGGTTCCCATAAACACAACTTTGCATGATACATAGTATTAATAGTTTTCAAAGGTAACTTTTATAATGAACTTCGATATGGGTAGCTAGTACTACATAAAACACAATTCCACAGAAGCTGTTGTTCTGGGAACCACTAAAATACAGGCCTAGTATCATCTATGTAATTAGGTTTTACATATCTATAGGGATAGATGCAAATTTATAGGACTACATTGCTAGCACAAACTTAAATTATTAAATCATTAAATTACTCCCCAGTTTTTTCTGTAATACTATTTTTTGTGAAGCCTGAGAAGCTTGACGAGTAGAATTAACTGCAGCCCCAAAGCCAAGTATCTCTCCACCAAAATTGTTTTCTTTTGCCTCAAAACCCGGAAGAACAAGTGATAGTTCCAGAGTTCTCTTCCTCATAGTGAACCTTGTGTACTTCTCAGATTATTGAAATCTATTGATTTAAATAATAAAATTCTGTTTCCTCTATACTTTAGTCTCTTTATTAAATTGAAAATAATTTTGAAAACTCATCATGTGAATAGTGTCATGTGAGAGAAGAACTGTTTTATGATTCAAGTTTTATGATTTGAGTAAAACAGTTACTTTAATGAAGAATTTTAAGCATTTATGGCCTACATACCTTGTGCTCAAATAGCTTTTAAGATAGTAATTTTTACATTTACTCTTCAGAAAAGTTGCTCATTTGAGTTCTCAATCACAAATGCTGATTCCTGAACTATTCCATTTAGATACAAACTGCAAACTGTTGGTGATTATCTAGTTATAATATACAAATGCTTCTTTTACTTCCCAGAATCAGATAGTAATTCAGAATCAGATACAGAAGGATCAGAAGAAGATGATGATGATGATAAAGACCAAGATGAATCAGATAGTGATACTGAAGGAGAGAAAACTTCAATGAAACTGAATAAAACAGCTTCCTCTGTCAAAAGCCCTTCCATCAGTCTCACAGCTCACTCAACACCTCGTAACCTCCACATAGCAAAAGCCCCAGGCTCTGCTCCTGCTGCCTTATGTTCTGAATCCCAGTCACCTGCTTTTCTTGGCACACCTTCTTCCACACTTACTTCAAGTCCACACTCTGGTACCTACACTTTATTTTTATTATTGTGAAGTAGAAATCAAACCATAACAAGAATTCTTATTTATACAGTGTTCTGGGGATGATCTCATTGGAATCAAGGCTAGATTTTAGGCTAAGAAAGGTCAGCGTGTATTTTCAAAGGATATGACTCACTACCATTTTTTCCTCTGTGCTTCCAATTTAAGAACCTGATTGATGGCAGCTCTTGAGTTTAAATACTTTCTTGTTTTTATGTTTATTTTATACTTCTAGAATTTAGAATTTGACTGACAGTTGGACTTTTTTTTTTTTTTTTGGTAATTTACAAAAATGAGCTCACTTTTTTTCTTAATATACAATTGCATGTCTGCCCAACACATAGCCAATGTCATTTGTATTAGTGAGTAGTAGTAGTATTTTATTAACATGCCATATCTTTTTTCCTTTTGATCTTTTATAAACTATTAGAGGTCTTCTTTAAAAGGTTTTGCATTATTACTCTCAAATTTCTATTCTCAATTGAATAACTAAAAAAATACAGGCGTGTATTGTAAAATATTGTTTTACACATGTCACTCTTTTCTTGAAAATTTGTAGTTTTGTTTTCACTTGCCATGAACCAATATGATATCCAACTTATTTAAGATGTATCCATTTGTATTGGTGAAGCTTGATCTTTATCATGAAAAATTGTCCATATAATTATAATCCTATTCTTTGTAGTTTAATTAAAGTGCTTTTGACTATGGATTTATATGGCTATAGAAGTTATATATTTTTTTATTTATTTATTTTAATTAGAGGCTAATTACTTTACAATACTATTTTTAAATGTATAATCCAACTGTTGAAATTTTTCAACATCTTAAAACTCATATTTTCAAAGAAAACAACTGTACATAGTTTCCTGAAACGTCTATCTGCTATTTTCCTTCTACTTCTTTAGCCATTTCCTTAATAACAAGATGAGAGGAAAGCTTTACCTTTTTACTTTCATCATCTTTTCATTAGAGAGAAATAAATACTAGCTATTATGTCATGCAGACCAAAAAGGAAAAAAAAAAACCTCTACACAGTGTGTTTTGTTGAAAATAATCTGAAAATAATGTACAAACTGCAGAAAAACACTAAATAATTCAAGTCATTAAGACACATTATTCAAAGAAAAGTTTCAAAACTAGCAAAAATTTTTCATGTATATAAACTAATCTTTTATGTTAACTGGTTGAATTTTCTTGAAG
Seq C2 exon
GCACTTCCAAAAGGAGAAGAGTAACAGATGAACGTGAACTGCATATTCCTTTGGAATATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020654:ENSBTAT00000027534:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=NA C2=0.714
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PD(34.5=59.4),PF0334410=Daxx=PU(39.0=36.1)
A:
NA
C2:
PF0334410=Daxx=PD(8.0=71.4),PF0142914=MBD=PU(24.5=61.9)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]