DreINT0036889 @ danRer10
Intron Retention
Gene
ENSDARG00000057782 | baz2ba
Description
bromodomain adjacent to zinc finger domain, 2Ba [Source:ZFIN;Acc:ZDB-GENE-070615-37]
Coordinates
chr6:11714988-11717159:+
Coord C1 exon
chr6:11714988-11715579
Coord A exon
chr6:11715580-11716877
Coord C2 exon
chr6:11716878-11717159
Length
1298 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
CACGTTTTCCTGTTCCTCAGAGT
3' ss Score
9.4
Exon sequences
Seq C1 exon
TCTTTTCTGCAGGACCAGCCGTTTCCTCTTCAACTGAAGAAACAGCAGAACCCATTTAAGAGCAACAAGAGGTCAGCGCCGCTCACATCATCATCTTCGTCCACCTCGTCCTCCTCTGTTCTCCCTCTTAAGCTCAGCTCGGAAGTGTCAGGCAGGACCAAACCCCCCACAACCCAAAGCGTGTCCTCCAGTCTGCCTTTCTCTCATGGCCTGTTGGGTCTAAGTCAGCCCAACGGAGTCATCCAGAGCACCCAGGACGTCCCTCTGGCCCTCACCACCAAAACCCGCTCAGATGTGCCCGTCAACCTCAGCACTGGAGGCCGCAAGAGCCCCGCATCCGCGTCCCCCACTCCCAACCGCAGCCGCGAACCCCGGAAGACCAAGACTCCCAAAGCTCTGGAGGCCTGGAAGGGTCTGTCCCAGAACCACCTGGTGCAGTCACTGGTGGACCTGTTTCAGCACAGCGGAGCCGAGCAGGAGGTGCCTAGCAGTAAAGACTCAGACGATTCTGCTGAGGATGAAGATGATGAGGATGATGATGTGGAGGATGAAGAGGACGATGATGAAGAGGATTCAGATGACAGTCTCTCAG
Seq A exon
GTTAGATATGACTATAAGAGAGGTTCTTTAAATGTTATGTTTTGACAACCCTTTTGACTATTTTATAGTTTATCCTATACCAGATTTTATAATCATGTAATCACATAAGAACTATCAAGTGAAGTCACAGGATTTATTTTAGTTTTAATTAAATTAAATTTTATTTTAATTAAAAAAAAATTATTTCATTAGTTTGTTTTATTTTATTACTTTATTTTATTTAATAAATTTATTTTTATTTATAATTTTATTGATTTTATTTTAGTTTAAGTTATTCATTTATTTTATTATTTTATTTAGTTTTATTTTAACTACATTTTATTTATTTAATTAATTTTTATTAAATTAAATGTGTTTTATTTTTATTTATTTTATTTTATTTTAAGTAGTTTTACTTTAATTTAATTTTAATTAATTACATTTATTTTATTTTTATGTATTTAATTTATTTTTATTTACTTTATTAACTTGTCATTCATTTCAGTTTTTTTGCATTTCTTTATGCAATATTCATCAGTGCATTTTATTTTGTAATTTTTCCTACATTATTAAAGTTGTATTATTTTATTTATATTTATATGCCTTTATATATTTCTTGCTGAATATAATTGCATTTTTAGTGGTTGATACGTCAGAATTAAGCCTCTTATGCTTGAAAGATAGCAGTATTATTGAATATTATTATAAAATGTATATATTTTTAAATAAATGTATGTTCAGTTGAATGCAAAATTATTAGCCCTTTTGTACACTTTTTTTATTGTTTTTCAAATATTTCACAAGTGTTGTTTAAAAGAGAGAATTTTTTCAACACATTTTTAAACATTAGTTTTAATAACACATTTCTAATAACTAACTGAAAGTACATAACATTTTACTTAATTTTTTTGCAAGATAATCAGCTCACAGTGCTTGTTTTGTATTTAAAAAACTAATTTCTCAAGAGGGCTTATGATATTAAGCCTAAAATGATATTTAAAAAATTTAAAACTGCTTTTATTCCAGGCAAACTAAAAGAAATGAGACTTTCTCCAGAAGAAAAAAAAAATATTTTAAGAAAAACTCTGAAAACGGCCTTGCTCTGTTAAACATCATCTGGGAAATATTTGAAATATTTCACATTAAAGCTTATAATTTTGTCCTCAATTGTATACGCATATTTTTTAATCTAATGAAATATCCCTCAAATTGTTTCTTTCTAATAACATTTCTTGCATTCTCACTGAAGAACGCATCAAACCAACAAATGACACAAGCAAAATACCATAAACATCATCACACGTTTTCCTGTTCCTCAG
Seq C2 exon
AGTCGGACAGTAATTCAGACAGTGAGATGAATGGCTCTGAAGGCACAAAAAAGAAGCGCAAGGATGCGAGCGCTGCGGAAATGGACACTGATGGAGAGAAGACTCCTCAAAAACTCAACAAGAGCCTCCTCAACTCCTCCACCAATCACAGCCTGTCTGACTGCCTGCCGCTAAACCTCCAAGTCGTTAAGCCCGCCAGTGTGGCCACACCCACCATCGTGAGCAGCTCCGGTGCCTATCACAGCTCTCCATCCTCCTCATACTCCGTTGGCACCTCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000057782:ENSDART00000151044:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.970 A=NA C2=0.968
Domain overlap (PFAM):
C1:
PF031538=TFIIA=FE(50.0=100)
A:
NA
C2:
PF031538=TFIIA=PD(3.8=15.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGACTCCCAAAGCTCTGGAGG
R:
GGAGGAGTTGAGGAGGCTCTT
Band lengths:
350-1648
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]