GgaINT0050404 @ galGal3
Intron Retention
Gene
ENSGALG00000012579 | BAZ2B
Description
NA
Coordinates
chr7:38232331-38234479:-
Coord C1 exon
chr7:38233870-38234479
Coord A exon
chr7:38232628-38233869
Coord C2 exon
chr7:38232331-38232627
Length
1242 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGTT
5' ss Score
2.16
3' ss Seq
GCTATAATTTTTCTTAATAGAGT
3' ss Score
6.18
Exon sequences
Seq C1 exon
GAACAATATAAACAGACATTCCCAGCAGCACAGCTAAAGAAACAGGAATCATCTAAGAACCTGAAGAAGGTTATTGCATCTTTGTCAAGCTCAAAACCGACATCTTGTTCACCAGCTCATCAAAAACTCACATCTTTGGAAAACAACCATTCTAATCCATTCCTGACAAATGCACTTTTAGGTAATCACCAACCCAATGGAGTTATTCAGAGCGTCATCCAGGAAGTTCCTCTTGCACTTACTACAAAACAGAAATCCCAAACCAAGATCAATGAAAGTGTAGCCATTGCTAGCAGTACCCCCTTTTCTTTGCCAGTGAACTTGAGTGCATGTGGGAAAAAAACAACTGGTAACCGGACACTTGTTGTGCCCTCTACCTCTCCTGTGTTACCTGGTTCAGGAAAGGATAAACCAGTCAGCAATAATGCAGTAAATGCAGTAAAAACACAACACTGCCTTCCGTCTGCAAAACTGGTGGTGGAGCAGTTCAGAGGGGTAGACTCAGATGCCCCCAGCAGTAAAGAATCTGACGACTCAAATGATGATGATGACGACGATGAAGATGAAGATGAGGATGATGAAGATGATGATTCTGATGATAGCCAATCAG
Seq A exon
GTGGTTTAAACTTTTTAATAGGAAAAGCAGAAACTTTTTTGTGTGTGTTGAAAATGTATTTATTTCCCACAGTATTTTTTAAATAGAGGAAGGCAATGTTGACGCAGCATGACCCACCCAGTGTCTTACAGATAGCATGGAAAGTAGTGCATGCCTCCCAGTCCTTCCTTGTGTCACATCCAAAATCATGTTTTGGGTTTTCTGGTACTTGGTCCCATGGCAAGCATACTTTCAGCTGTCCTGGTAAATAGGGTTCAGGGGCCTTCTGGAAAGACTATCAAAGAACTAATATCCAGATAAATTGCCCAACCTGCTATTCATGTACTGTTTCCATGGCAGGGTGCACAGGAGAGAGTTGGGGGGGGGGGGGGGGTAGGCTGTTTGTCAGGCAGAGTCCATCTGCTGAGCAGCCTTCCTCAGCCAGAGAGGCACTAAACAAAACTGCCTTCAAACTTTCAAGACTGGTAAGAAAAGCGTATTTCTAGGCTTTATTCAGGAGCACAGTAGTGAATGAGCTTAGAGAATCATACCAGGACAGTTGTAAAGGCTGCATTGTTCTTAGATAACTTTCTGATTTGTTTTTGAAGACTCAGGTGATTCAGAAAGACATGACTTGTTTTGAAGAGTTTATTATATTACCAGCCACTCCCTTCCCATGTGTGCCCATATCCCTTGTGTCCTGCTCCGCCTTTGTTATTCTCCTCTTACTTTATCCACACACCTTCTGTTGTCCTCAGAACTGTTTCCTCTTTTCTGTTCCTTACCCTGTCTGTCCTTTACCCTATATCTAACTTAGCCGAGATTGCCACCATTTCTGACGCCTCTCTCTCTCTTGCACCCAGTTCCACCATTTGCTTCCTTCTCTTTGTGCAGGATTTCACAGCTTTTGTAGTTGCCCTTCCCACAGCAGGGTGTGCATACCGGGCTCACAGGGCAATCTAGCTGTAGTCTGCCCTATGGTAAACAATCTCTTAAAACACTCTGTTTCTGTCTCTCTTCTTGTGAGGAGCAGCAGTGCATTGTAACACAGAACTACTTTATACTGTCATAATTTTAGTCATTTTGAAGTTTAGCTAATTCATTATAACCTCTGATTGTTATTCAAGGAATGTTATAAAAGTTTTGAAGTCAGAAAACCTTTGGATTTAATAAGACCAAAGACTTCACAAGTGTTAAATCTTAAGTGTGTTTGATGTTAATTAACTGGTCTTATCTGTCTTTTGCTATAATTTTTCTTAATAG
Seq C2 exon
AGTCTGACAGTAATTCCGAGTCAGATACAGATGGGTCTGAAGATGAAGATGATGAGGATGATAAGGATCAAGATGAGTCAGATACGGACACTGAGGGGGAAAAAACTCCACTGAAACTTAAGAAAACTGGTTCCTCCATAAAGAGCTCTTCCATTGGTCCTGTAGCTCATTCCACTCCGCTAAATCTCCAAGTAGCAAAGACCCCGAGCTCTGCACCATCTGCCTTATGTCCCGAGACCCAGCCTGCAGTTTTTCTTGGGACAACACCATCTACTCTTACACCAAGTTCACACTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012579:ENSGALT00000037699:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.730 A=NA C2=0.996
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PD(30.9=50.0),PF0334410=Daxx=PU(45.8=31.9)
A:
NA
C2:
PF0334410=Daxx=PD(53.5=76.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCAAAACTGGTGGTGGA
R:
TCGGGGTCTTTGCTACTTGGA
Band lengths:
356-1598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]