MmuINT0024171 @ mm10
Intron Retention
Gene
ENSMUSG00000026987 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:MGI Symbol;Acc:MGI:2442782]
Coordinates
chr2:59959821-59962630:-
Coord C1 exon
chr2:59962021-59962630
Coord A exon
chr2:59960106-59962020
Coord C2 exon
chr2:59959821-59960105
Length
1915 bp
Sequences
Splice sites
5' ss Seq
CAGGTTATT
5' ss Score
3.49
3' ss Seq
AGTGCTTCTTTACTTCCCAGAAT
3' ss Score
7.33
Exon sequences
Seq C1 exon
GAACAATATAAGCAGACATTCCCATCACAAGGAAAGAAACAGGAGATGGGGAAGAGCCTGAAGAAGGTTATTGCAGCTTTGTCAAATACTAAAGCAACCTCTAGCTCACCAGCACATCCAAAACTACCACTAGATAACAACCACCCTAATCCATTTTTGACAAATGCACTTTTAGGGAATCACCAACCAAATGGAGTCATTCAAAGCGTCATTCAAGAAGCTCCGTTAGCACTAACTACCAAAACGAAAATGCAGAGTAAGATTAACGAAAATGTCTCAAGTAGCACCCCGTTCTCCTCACCTGTCAATCTGAGCACGAGTGGGAGGAGAGCCCCTGGCAGTCAGACTCCAGCGCTGCCCTCTGCCTCGCCCATCCTGCACAGCAGTGGGAAGGAAAAGCGGGTCAGCAATGACGCAACCCCGCTCAAAGCGCACCATCACCCCCATCCGGCGGCAGCGGCCGCGGCCTTGGTGGAACAGTTTAGAGGGACAGATTCAGACGTTCCCAGTAGTAAAGACTCTGAGGACTCAAATGAGGATGAGGAGGAAGATGATGAGGAAGAAGATGAAGAGGATGATGAAGATGATGAGTCTGATGACAGTCAATCAG
Seq A exon
GTTATTTTCTGCTTTAACTTTTAAAGTTTGTTTTTAAGTGTATGTACCAGAAAGTTTTCTAAAACATCGTGATTTTCACACTTAGACTCACCGCCACTCACTGATTTCTTACAGCCAATAAAACGTAAAATTGTTTCTGAAACTGTAAGTTAAATCTTAGATTGTGGTTCCCCTGGCATTAGTGACTAATTGTAAAGTGCTGGTGCATGAATCAAACAGTTTGATCAGGTTGCTGAGTTTCCATTTCATCATGACCACTTACACAGTGCAATTGTTATGTTTTCAAAACTAATTTTAAGCCAGGTGGTGGTGACTCATTCTCTCAATCCCAGCACTGTGGAAACACACAGGCAGATTGAAACCAATAATAATAATAATAACAACAACAGCTAATAATTTTGACCCATGTTAGCTGCATACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGAGGCAGGTGGATCTCTGTGATTTGGAGACCAGCCTGCTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTGGGCAGAGAAGCCCTGTCTGAGGTGGGGGGGGGGTGAGTGGGTGGATTATGCATTAATTTAGAATTTCACTCAATGTGTTTTGAGCATACCTTGCCCCTTTCTTGCTCCTCACCATGCCCCATCTCCTCCCGCAATGTCTTCTCCATTACCCTACCAAGGCCAGCTAGTGCTGCCCAGGTATTCTTGGGTGTGCTTTATTTTCTTCTGCTACCTATTAAAACATTACTACCTATCTTTAAAATGGAAAATTTTGCACCATGGTCATTTAAAAAACCAAAATCTTAAGTCCCTTTTGATTGCAGGATTTATTAAATGACATAGGGTCATCATCTTATGCCTTGACTTCATCTACTCTCTCTAGTGGTTTGGTTTGTTTTTTTATAAATAGAGATTGCTTTTAAATTCATAAAATGAAAGATAATTTAAAATATAAATACAGAAATGATACAAATATGTATGTATTAATGTTTGTATATGGATTTGTTGCTGTTCTGACAGGAATTTTTTAGTAACTAATGGGAATAGGAAAACAGTCCTTCTACAATTTAACATTCTAATATTGTACAATCCCGAAAGGCACTGTCTATCTGTATCAGGGCTTTTTAAAAGTAGCTTTCATCGAGCCCCAGTGCGGGCAATATACCAGACCAAACAGTGCCACCGAGATGCTGGCTGGGCACCTTTGTAGTACAGCCCTATGTTTACCCAGTGTTTAATCCACTCTTGTATGTCATATGTCTAGAGGAGTATGTGCTGACTAACATATGTATTAACTTCCCAGACTTCACAACCAGGGCAGACCTGCCTCCCTCAGCCTGTCTCTTGTCTTACCACAGTTATTCCTGTGAGCATAGTTTGTGAATCTCTCAAAACTTGATGAAGTCTTTACCTGAATTGAAAAACTACAGCTAAGAAAGCAAAGCACAAAACCAAAACTACTCCCTAGGGGGGAAACATTTTTTTTTTAACGCAGAATCACAGGTGGAAAGTTGACGGTAGTTCCAGGACAAGGGGCTGAGCAAGGAGCTACCACAGCGCTGGGGCCTGCCAGGGTCCCCTCTGTTACCCGCGGTTTCTCCATGGAGAGTAAAGTAATTCTGAAAACCTGAAGCAGAACTGCAGTATCAGTAGTACCAACCGTGTGGGGACTTTTCTATGATTTAAATGTTAAAACTGATGATTTGGAGAGAGATTTGAGGAACTGTAGTCTGCATACACTTTACTCCAATAGCTTGTAAGTTGGTAATTTTAATATTTGCACTTCCTCTTGGGAAATGGCTTCCTTGAGTCTTTGGTCACAAACGGTGGCTCTGAAATACTCTCCTAGGTGCGACCTGCCTGTGATTGGTTCTGACCTAGCTGTAACATGCAAGTGCTTCTTTACTTCCCAG
Seq C2 exon
AATCAGATAGTAATTCACAATCAGATTCAGAAGGCTCAGAAGACGACGAGGAGAAAGACCAGGAGGAATCAGATAGTGACACTGAAGGCGAGAAACCTGCCGTGAACCTGACCCAGACAAGCTCCTCTGCCAAAAGCCCTCCCTCCAGTCTCACAGCGCACTCAGCACCTCACCTCCACATAGGAAGCCCCCCAGGCTCTGCTCCTGCTGCCCTGTGCTCTGAGTCCCAGCCTCCTGCTTTTCTTGGCACTTCTTCTTCCACACTCACTTCAACTCCACACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026987:ENSMUST00000112550:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.985 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0334410=Daxx=PD(35.0=58.8),PF104464=DUF2457=PU(57.4=38.2),PF0334410=Daxx=PU(43.8=38.2)
A:
NA
C2:
PF104464=DUF2457=PD(41.9=59.4),PF0334410=Daxx=FE(53.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAATCTGAGCACGAGTGGG
R:
TCGTCGTCTTCTGAGCCTTCT
Band lengths:
356-2271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types