RnoINT0024844 @ rn6
Intron Retention
Gene
ENSRNOG00000056984 | Baz2b
Description
bromodomain adjacent to zinc finger domain, 2B [Source:RGD Symbol;Acc:1309801]
Coordinates
chr3:46028279-46031057:-
Coord C1 exon
chr3:46030457-46031057
Coord A exon
chr3:46028567-46030456
Coord C2 exon
chr3:46028279-46028566
Length
1890 bp
Sequences
Splice sites
5' ss Seq
CAGGTTATT
5' ss Score
3.49
3' ss Seq
AGTGCTTCTTTACTTCCCAGAAT
3' ss Score
7.33
Exon sequences
Seq C1 exon
GAACAATATAAGCAGACATTCCCATCCCAAGTAAAGAAACAGGAGTCGGGGAGGAGCCTGAAGAAGGTTATTGCAGCTTTGTCAAGTACGAAAGCAACCTCTAGTCCACCAGCACATCCAAAACTACCACTAGACAACAACCACCCTAATCCATTTTTGACAAATGCACTTTTAGGGAATCACCAACCAAATGGAGTCATTCAGAGCGTCATTCAAGAAGCTCCGTTAGCACTAACTACCAAAACGAAAATGCAGAGCAAGATTAACGAGAACGTCTCCACTAGCACCCCCTTCTCCTCACCTGTCAATCTGAGCACGGGTGGGAGGAGAACTCCTGGCAGTCAGGCCCCTGCGCTGCCCTCCGCCTCACCCATCCTGCACAGTAGCGGGAAGGAGAAGCGCGTCAGCACTGACGCAGCCCCGCTGAAAGGGCACCATCACCCCCATCCGGCAACGTCGTTGGTGGAACAGTTTAGAGGAACAGATTCAGACATTCCCAGTAGTAAAGACTCGGAGGATTCAAATGAGGATGAGGAGGAAGATGAGGAGGAGGAAGATGAAGAGGATGATGAAGACGACGAGTCTGATGACAGTCAATCAG
Seq A exon
GTTATTTTCTGCTTTAAAATTTAAAGTTTGTTTTTAAGTATATGAACCAGAAAGTTTTCTAAAATTTCCCACTTTCCAAACTTGGAGTCACTGTCACTCACTGTTTCTTACAGCTGATAAAAAATAAAAGTTAATTGGTACTGAAATTCTAAGTTAGTCTCAGATTGCCGTTCCCCTGGCATTGAATGGCTGATTGTAAAGTGCTGGTGCATGAGTCGAGCGGTTTTATCAGATTGCTGAATTTTCATTTCATCGTGACCACCTATGCAGTACAATTGTTATTTTTTTCGAAAACAATTTTAAACCAAGTGGTGGTGACCCATGCTCTTAATCCCAGCACTTTGGAAACATATAGGCAGTCTCTGAGTTTGAGATTGAGAAACTCTGTCTTGAAAAACCAATAACACCAACAGCAACAGCTAGTAATTTTGAGCCATGTGTAGCAGCGTATGCCTTTAATCCCAGCTCTTGGGAAGCAAAGCAAATGGATCTCTGTGAGTTCGAGACCATCCTGGTCTACACAGTGAGTTCCAGGACAGCCAGGGCTTTACAGAGAAACCCTATCTGGGGCGGCATGGGGGGTGAGTGGTGGATTATGAGTTCTTTAGAATTTCATTCAATGTGTTTGGAACATACCTGTCCCTTTCTCGTTCTTCCCATGTCCCTTCCCTTTCCCCTAAGTTTTCTCCATTACCCCTACCAAAGCCAGTTAGTGCTGCCCAGATATTCTTGGGTTTTGTTCTGCTACCTATTAAAACATTACCGGATATCATTAAAATGGAAATTTTTGCACCATGATCATTTACAAAGAACCAAAACCTTAAGTCCCTTTTGATTTCAGAGTTAATTAAGTAACATAGGGTTATGATCTTGTACCTTGATTTCATTTACGCTCTAGTGGTTTTGTTTTGTTTTATAAACAATGTTTTTAAACTCATAAAATGAAAGATAACTTAAAATATTAATATAGAAATTATATAAATGTTTTATATATTTATGTTTGTATGTGGATTTGTTCCTGGTCTACCAGAATTTTTTTAGTAACTAATGTGAATAGAAAAATAGTCATTATACAATTTAACATTCTAATGATGTAAAATTCTGTAATTCTGTATTCAGGACTTTTTAAAAACTAGCTTTTATTGAGCCCCAGTGAGGGAAATAATGCCAGACCAAACAGTGTCCCATGGGTGCTGTCTGGGCATCTTTACTGTATAGGTCTGTGTTCATCCAGTATTTAATCCAGTCTTGTATGTCTCCTGTCTAGAGGACTATGTGCTAACTAACATGTGTATTAACTTCACAGACTTCACAGCCAGGACAGACCTGCCTGCCTCCCTCAGCTTGTCTCTTGTCTTACCACAGTTATTTCTGTGAGCAGTTTGTGAATCTTTCAAAGCCTGATGAAGTCTTTACCTGAATTGAAAAACTACAGCTAAGAAAGCAAAAGACAGAACAAAACCACTCCCTAGGAAAAAAATTTTTAATGCAGAATCCCAGATGGAAAGTTGACGGTAGTTTTGGGGCAGGAGCTGAGAGGGAGACTCTGTAACCCGGGACCCACCAGTGTCCCTTTACTCAGGGTTTGAGTATAAAGTGATTCTGAAAGCCTTAAGCAGAACTCAAACATCAATAGTACCATGTGGGGACTTTTTATGATTTAAATGTTAAAACTGATGTCTGAAGAGAGATTTGAGGAACTGTAGTTTACATACACTTTACTCAAATAGCTTATAAGACAGTAATTGTAATATTTGCACTTCTTCTTAGGAAATTGCTTCTTTGAATCTGCAGTCACAAACAGTGGCTCTGGAATACGCCCCTAGGTACAAACTGCCTGTGATTGGTTATGACCTAGTTGTAATATACCAGTGCTTCTTTACTTCCCAG
Seq C2 exon
AATCAGATAGTAATTCAGAATCAGATTCAGAAGGCTCAGAAGACGACGATGAGAAAGACCAGGAGGAATCAGATAGTGACACTGAAGGCGCGAAACCTGCCGTGAACCTGACTCAGACAAGCTCCTCTGCCAAAAGCCCTCCCTCCAGTCTCACAGCGCACTCAGCACCTCACAACCTCCACATAGGAGGCCCCCCAGGCTCTGCTCCTGCTGCCCTGTGCTCTGAGTCCCAGCCTCCTGCTTTTCTTGGCACTTCTTCTTCCACACTCACTTCAAGTCCACACTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000056984:ENSRNOT00000081302:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.990 A=NA C2=0.996
Domain overlap (PFAM):
C1:
PF041477=Nop14=PU(53.5=34.3)
A:
NA
C2:
PF041477=Nop14=PD(45.7=60.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCAATCTGAGCACGGGTG
R:
TCATCGTCGTCTTCTGAGCCT
Band lengths:
352-2242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]