BtaINT0025160 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010736 | BBS5
Description
Bos taurus Bardet-Biedl syndrome 5 (BBS5), mRNA. [Source:RefSeq mRNA;Acc:NM_001101132]
Coordinates
chr2:26818590-26821659:-
Coord C1 exon
chr2:26821568-26821659
Coord A exon
chr2:26818673-26821567
Coord C2 exon
chr2:26818590-26818672
Length
2895 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
AGCCTTTATATTTATTTTAGACA
3' ss Score
6.19
Exon sequences
Seq C1 exon
GGACGCCACCCGGCCTCCACCGCTGTGGTCACCATGTCGGTGCTGGACGCGCTTTGGGAGGACCGGGATGTCCGCTTCGACGTGTCCTCACA
Seq A exon
GTGAGTCGCCAAGGTTCCCCAGGGGCCTGGAGCCTGTAGAAGGCGTCGCAGCGCGATTTCCCGGCCCGCGGGCGGAGTCTACGACCCCGCGGCTCACGGGCCTCTCGAGGGTGGGAGGAGGTTGGCGCTGCTGTGCTCGCCTCAAGAAACCCCAGACTGGCCGGGGCCCTGTGGCACTCCCGAGGCCCCACAGCCGGGGCTCGTCTAGGTTGTACGCCGTTTTGGTCCCGTAAAATCCTAGGCCTTGTCTTGGCTGTAGTCTATCAGGAAGCTGAACCCAAACACGGCCGGGACCGCCGAGGGCTTGGGCGTCTAGTATACCCCAGTGAACTTGCCGTGCCAGTTTCTTATGGTGGAAGGAACCTGGGGCAGCGATTCAGGAAACGAGGATTCTGAAACTAGCTCTAGAACAAGGACATACATTGTGGGCCCTTAGAAAAATGACTTCATTCTAAAGCTTGAGTCTCCGAAGGAAGTGGGAGTAAGCATTTTCCAGAATCCCCCAGCATGCAAACTTTATTCCCATGGTAAGCTTCCATCTGGTTATTCAACTAAATCACCAACAGTAAGAAGGAACCTCCTTTTGAAGTCTCTCAAACAGAAATCCTGTTTTAGGAAATTTAATGTTTTAAAGAATAGTTAGAAACTTCCTGCCAGCAGTCCATGAAAAAATGCCCGTTGGGTATTCAGTTTAGTCCGACTGTTTGCCACCTCATGGACTGCAGCACCCCAGGCTTCCCTGTCCATCACCCGCAGCCTACTCAAACTCATGTCCATTGCGTTGGTGATGTCATCCAACATTGAGTATTAAGTATTGAAAAATAATAAAGTTAAAGGTTCTTAGTAATGGTTTGCTGCTTTTTAGCCACTTCTCACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACAGGGGAGCCTGGTGGACTGCCGTCTATGGGGTCGCATAGAGTCGGACACGACTGAAGCGACTTAGCAGCAGCAGCAGCATGATTCTTTACTATGAACAGAATTTTCGTCGGTGGAAAAAATGAAATATTAATTTCCCAGACTTAGTTGTGGCTAGATATCTATTACTAAGATGGTCTTGGATCGTTTAAGACAGTTGTGAGAGAAGGGAATTTATAGTTATATGACAGTAATATGTTGCACACATTCTTTGACTTTTTCTATTATCCCTGGAAAGTTCTTAATCAAGCAAAGGTCCATTTCATGAACATTTTCAGTTTATTAAACATTTATCAAATCCTTGGTGTGTGCTGGTTACTGTGCTGTTAACTGGGGCTTCCCAGGTGGCGCTAGTGGTAAAGAACTCGCCTCCCAATGCAGATGTAAGAGAAGCAGGTTGGATCCCTGGGTGCGGAAGAACCCCTGGAGGTGGAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATGGTTGGAGATGCAAAAAGTTTTAAAAATAAGTAAAGATACAAAATAATAGGAAATGACACCACCCTACCCCACCATTCTAGTGCAGGGATACATACAGACAACTATTTAAAATGTGGTAAATACCATCATTGAAAAAAATGAACAAAAAGCTGGAAGATCATAGAAACAAAAAAGTCCATTATTCCTAGGAAAGGCCTCAAAGAAAAAATAATATCTGAATTGAGATATTGAGATTCATCAATATCGTAATTGATGAATGAGCAGAGCCTTGGTAGAGGAGACGGGAGGAGAGTATTCCAGAAAAAAGGAAGGAAAAATAAATTAGATACAGAGTCTTAGAGGTATAAATCTCATTGGCTAGAAGGCAGGATCTGGCAAGTAGAGGGAAGAGGTGCAAATAGAAAGGAAAATTAGCCAGATTATGAAATATTCAGTTGAGGATTTGGGGCTTCCTTCTTCTAGGCATTGGGATAAGTTACTTGGCTTTTGAAGCAGGAAAGTGATATGATCATGTCTGTATTTCCAATAGATAATTGAGTTAGCTTTATTGAGAATGTGTTAGAAAGCCCCACCACATATTCTGCTGGGTTTTTTTTGTTTGTTTTTTTTTTTTTTTTACGGACACACTACATTGCATTCTGTCAGTCAGCAACCTATTCTTCACTCTTTATTTTCTTTTGTCTCCTTTATCTGATTTTTTACCAAGTCCTACTCTTGCCTGGAAAATCCCATGGACAGAGGAGCCTGGTAGGTTGCAGTCCATGGCGTCGTGAAGAGTCGGACACGACTGAGCACCTTCACTTTCACTTTTCACTTTCATGCATTGGAGGAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCTGGGACAGGGGAACCTGGTGGGCTGCCGTCTTTGGGGTCGCACAGAGTCGGACACGACTGACGTGACTTAGCAGCAGCAGCAATGTTGCTTTGCTTTAACCCGTTCCTTCTGTAACTGCATGACTTCTTTGGTCTATACAGAAACCTCTGGGGCTTCTCCACTGTACACCAGATAAAACCCATATCTGTCTGACTGTCATTCTAGTTCTCCATAATCTGGTTTGTTCTCACTTATCCTATTGTATTTTTCACTCTCTCTCAACATGGACCTTCTTCCCCAGCCAGGCCAGTCTCCCCACATTCTCTTATCATTTCTTACTTCTAAGATCTTTAATCATGGATTCTCTTCTCTCTCTCTTATTTCTCTAAATGCTTTCTTTCTCTTTATTTCTGGCTTCTCTGCATGTCCCTGGTCACTCCAGGCCCCACTTGATCGCCAGGTTCTTAAAATTCTTGCAAACCTTATTTTCCAATGGCTGAACATTGGGTACTGTATCATTTATACTTCTGTCTGTTTTATATATAGATGTCTTTTCCCTCCCACAATTGTAAGCGGATGTTGTAGCTAAAATATTAAAGCCTTTATATTTATTTTAG
Seq C2 exon
ACAAATGAAAACAAGACCTGGAGAAGTCCTTATTGATTGTTTAGATTCAGTTGAAGACACCAAAGGAAATAATGGGGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010736:ENSBTAT00000014216:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=PU(4.2=70.0)
A:
NA
C2:
PF072896=DUF1448=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]