GgaINT0050433 @ galGal4
Intron Retention
Gene
ENSGALG00000009846 | BBS5
Description
Bardet-Biedl syndrome 5 protein [Source:RefSeq peptide;Acc:NP_001238960]
Coordinates
chr7:18180212-18181640:-
Coord C1 exon
chr7:18181245-18181640
Coord A exon
chr7:18180295-18181244
Coord C2 exon
chr7:18180212-18180294
Length
950 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
TTGTTTGGTTGTTTTTCCAGACA
3' ss Score
8.17
Exon sequences
Seq C1 exon
CACATTTTACAACTACGAGCCTCACAGGGTTGTTTTTGTTTAATGTTCATCCACAGTGTGACCGTTACCTTGTACCAGACACATCTACGGTACGAGGAAAAGCCGCACCCAGCGGCCCGAGGCGCCCTGCCGTCCCTCACACAACGCCCACACACGCCGTTCCCGCCAAAACGCCCCCGGGCACCTCCTGTGGCACCTCACGGGGCTCGGGGCGGGGCGGGAGAACGGGCACCGCCCGCTCCAAGGCGGCAGCCAATCCCGAGCGCTGCGGGAGCGCCCCCGTTGCCAGGGCGGCGCGAGGCCTCGCCGGAGGGAAGCGAAGCAGCGGACAGCTATGAGCGCCGTGCTGGACGTGCTGTGGGAGGACAGAGATGTCCGCTTCGACATCTCCCCGCA
Seq A exon
GTGAGTGACACTTGCCTGTACCGCCCTTACAGCGGGGCTGCGGGGACCCGGCCGGGGCGGCCGCAGTTATCGCTGCCTGTTGGTAAACTGGGTGAGGCCGCTGTGAACAGCGCGGTGCGTGCCGGGACGCCCTCGCTGTGATGGCTGCTCCGTCACGTGACGCGGAGGGGCGGGAAGAGGCGGCGGGCGGGCTGTGCCGTGCCGCTGAGGTGCCGCTGAGGCGCCGCTAGGTGGCGCTTTTGTCTGCTGAAAGCTACCACCCAAACGTAGGTGTGAGTGGGGGTTACGGGAGGGGGGGCTGTTTGTTGTCTGGCGTTGGGAAGTCAAAATAAACGTACGTTTCGGGGCGGAAAAGGGAATTCGTTTCTTGGGAATGCCTTTGTATTTGCAACGTCTGTGTACTGAGGAGTTTCGGCTGCTTTGCACGGTACAATTGTAATACAGCAGAATTTCACACCGGCTCTGTGGTTGAGCGGGCAGACCTGTTAAATCAAGCAAAATGGAAAAGTGGAAGGTTTATGAGGGCGTTTCACTTGTCAGCACGCACCTGGATCTTTTGTGCAACCAGCTGTGCCCTCAGCTCGGCTCCAGGCTGGAGGGCCCCGAGGTACGAAGCACACACTGAGGTCCTCCAGAGCAGCTCCTTGCTTTTCTGCCCTGCTCTCACGTGCCTCATAACGACCTTCAGGTGCAGTTTGCTTATCACCTTTCCTACACAGTTATTTACTGTTACCATTTAAAAATAAGGACACTGGTATTTTTCATGTGCTCTGTGTGGCAATAACAACTTCAGGTATGCGTGGTTGATTTGTGTGTGGGCATATATTAATTTTCTGTAAGGCAATGCACCAAGGAAAGGGAAGTGAGTGAGGGAATATAAATGGGCCTCCCTGTGAGGGTAAATATAATCTTTCATTAGGTTGGTTTTTTTTGTTTGGTTGTTTTTCCAG
Seq C2 exon
ACAAATGAAAATGAGACCTGGAGAAGTCCTTATAGACTGCCTGGAGTCCATTGAAGATACCAAAGGAAACAATGGAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846:ENSGALT00000016007:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=PU(4.2=66.7)
A:
NA
C2:
PF072896=DUF1448=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGGAAAAGCCGCACCCAG
R:
TCAATGGACTCCAGGCAGTCT
Band lengths:
357-1307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]