GgaINT0050433 @ galGal3
Intron Retention
Description
NA
Coordinates
chr7:20144148-20145242:-
Coord C1 exon
chr7:20145181-20145242
Coord A exon
chr7:20144231-20145180
Coord C2 exon
chr7:20144148-20144230
Length
950 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
TTGTTTGGTTGTTTTTCCAGACA
3' ss Score
8.17
Exon sequences
Seq C1 exon
ATGAGCGCCGTGCTGGACGTGCTGTGGGAGGACAGAGATGTCCGCTTCGACATCTCCCCGCA
Seq A exon
GTGAGTGACACTTGCCTGTACCGCCCTTACAGCGGGGCTGCGGGGACCCGGCCGGGGCGGCCGCAGTTATCGCTGCCTGTTGGTAAACTGGGTGAGGCCGCTGTGAACAGCGCGGTGCGTGCCGGGACGCCCTCGCTGTGATGGCTGCTCCGTCACGTGACGCGGAGGGGCGGGAAGAGGCGGCGGGCGGGCTGTGCCGTGCCGCTGAGGTGCCGCTGAGGCGCCGCTAGGTGGCGCTTTTGTCTGCTGAAAGCTACCACCCAAACGTAGGTGTGAGTGGGGGTTACGGGAGGGGGGGCTGTTTGTTGTCTGGCGTTGGGAAGTCAAAATAAACGTACGTTTCGGGGCGGAAAAGGGAATTCGTTTCTTGGGAATGCCTTTGTATTTGCAACGTCTGTGTACTGAGGAGTTTCGGCTGCTTTGCACGGTACAATTGTAATACAGCAGAATTTCACACCGGCTCTGTGGTTGAGCGGGCAGACCTGTTAAATCAAGCAAAATGGAAAAGTGGAAGGTTTATGAGGGCGTTTCACTTGTCAGCACGCACCTGGATCTTTTGTGCAACCAGCTGTGCCCTCAGCTCGGCTCCAGGCTGGAGGGCCCCGAGGTACGAAGCACACACTGAGGTCCTCCAGAGCAGCTCCTTGCTTTTCTGCCCTGCTCTCACGTGCCTCATAACGACCTTCAGGTGCAGTTTGCTTATCACCTTTCCTACACAGTTATTTACTGTTACCATTTAAAAATAAGGACACTGGTATTTTTCATGTGCTCTGTGTGGCAATAACAACTTCAGGTATGCGTGGTTGATTTGTGTGTGGGCATATATTAATTTTCTGTAAGGCAATGCACCAAGGAAAGGGAAGTGAGTGAGGGAATATAAATGGGCCTCCCTGTGAGGGTAAATATAATCTTTCATTAGGTTGGTTTTTTTTGTTTGGTTGTTTTTCCAG
Seq C2 exon
ACAAATGAAAATGAGACCTGGAGAAGTCCTTATAGACTGCCTGGAGTCCATTGAAGATACCAAAGGAAACAATGGAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009846:ENSGALT00000016007:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.071 A=NA C2=0.259
Domain overlap (PFAM):
C1:
PF072896=DUF1448=PU(29.8=66.7)
A:
NA
C2:
PF072896=DUF1448=FE(59.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]