DreINT0036944 @ danRer10
Intron Retention
Gene
ENSDARG00000039827 | bbs5
Description
Bardet-Biedl syndrome 5 [Source:ZFIN;Acc:ZDB-GENE-040426-1083]
Coordinates
chr9:48597761-48599074:-
Coord C1 exon
chr9:48598867-48599074
Coord A exon
chr9:48597844-48598866
Coord C2 exon
chr9:48597761-48597843
Length
1023 bp
Sequences
Splice sites
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
3' ss Seq
TGATCTTTTGTTTCATTTAGGCA
3' ss Score
9.37
Exon sequences
Seq C1 exon
GTACTAGCTGATGTTACCGTGGTGACGTGACGACGCCTCAGCCTACGCTAAATCGTCTTAGGAAGAGATTGAACGCTTTTCAGCGCGCTTCAATAGTTGAAAATCTATACTTGGGTTTAATTCGACAATATACGCAGACAGTGATCATGGCGTCGGTGTTGGACGCGCTCTGGGAGGACAGAGACGTGAGATTTGACATCACTGCACA
Seq A exon
GTAAGTTCCCAGGCTAATCCACTAGCTCACAAGCTAATGGCATTAATGTATTAAACCACATACATGAACAGTGAACGATAACGACACTATTTGCATTTGGACACACGCTAATGTTTCCCTCTGATATTTGCTGTTTGTGATATTAAGGTACAGTTAGATTTACATTCACTCATTCAGACTTTCTCCTTAATAATAAACATTTAAGAAAGTGTTATATGCAAATTCTCGTTCATTGTTGAGGTAAAGTGGGATTTAAATTCGCACAATGATTCATTTTTGAGCAGTGACAACTTGTGACACGGTCCCTATATTGTTTACACAACGCTAACGTTACTTTGAATAGTCTGAAATCGCATGTAAATATGGCGTCAAAATAACATTGGCACTATTTAATTGATGGTAAACAATGTTGAACTTCGATTTTCCTATTTAGATTATGCAAAGACTATTCATTCATTCATTTTCTTTTCGGCTTAGTCCCTTTATTAATCAGGGGTCGCCACAGCGGAATGAACCTTATCCAGCATATGCTTTATGCATCGGATGTCCTTCCAGCTGCAATCCATCACTGGGAAACATCCACACTTATTCACACACATACACGATGGAAAATTTTAGCTTACCCCATTCACTTATAGCACATGTCTTTGGACTGGGGGAAACCGGAGCACCCGGAGGAAACCCACGCACGTGGACACAGGGAGAACATGCAAACTCCGCTCAGAAATGGCAACTGGCCCAGTCATGACTCCAACCCCATGACTTTCTTGTTGTGAGGCGAGCCACCATGCCACCTAAAATATGTCAATGCATGTATTTAAAAAAAAATACCAAAAAATGTTCCTAGAAAGAAATGTAAATGTCCACTATTCAGTTATGTTAATTTATGGTATGGTGACATGTTTTATATATTAAAAAATGGATGGCTAAATGATAAATTTATTCAGAATTTCATTTAAGTGTTTAACTATGCAAGTCTGTTATTTTTTCAGAGTGTGGCAATTGATCTTTTGTTTCATTTAG
Seq C2 exon
GCAGATGAAGACCAGACCAGGTGAAGCACTCATCGACTGTCTGGATTCAATTGAGGACACAAAGGGAAATAACGGAGATAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039827:ENSDART00000058255:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=PU(4.2=66.7)
A:
NA
C2:
PF072896=DUF1448=FE(8.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTAGCTGATGTTACCGTGGTG
R:
TCTCCGTTATTTCCCTTTGTGTCC
Band lengths:
286-1309
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]