RnoINT0024912 @ rn6
Intron Retention
Gene
ENSRNOG00000007127 | Bbs5
Description
Bardet-Biedl syndrome 5 [Source:RGD Symbol;Acc:1310718]
Coordinates
chr3:55886695-55888373:+
Coord C1 exon
chr3:55886695-55886785
Coord A exon
chr3:55886786-55888290
Coord C2 exon
chr3:55888291-55888373
Length
1505 bp
Sequences
Splice sites
5' ss Seq
GCAGTGAGT
5' ss Score
7.39
3' ss Seq
CACATTTGTGCTTATTTCAGACA
3' ss Score
7.02
Exon sequences
Seq C1 exon
GTGGATTTTAACGGCGGGCTCCCTCGGTCACCATGTCTGTGCTGGACGTGTTGTGGGAGGACCGCGACGTGCGCTTCGACGTGTCCTCGCA
Seq A exon
GTGAGTCTCTGGACGCGCTGGGACCCCGCAGCTACGATCCCCTGCGGTCCTCGGCCTTGCCCTGGCTAGCAGCCTATGCAGCGCGCGCCCATCAAGGCTGCACTCTCCGCGTCCAGCAGTGAAGGAGACATAGGGCTGGGATTCGGAAAACAGGGTTCTAGAACAAAATCCAGAATAGCATTGCACGTTAAGGGCCTCTGCACGTTTGGCGTGTCTGTAAAATGAGGGCGGTGGGAGTGAGAATTCTCCAAAACTACCGACCACACAAAGCTTGGTTTTTCATTTGGTTTTCTTCTAAATCTTTGAGAGCTTGTTAAAAAGAAGCCTTGTTTGTGGGGGAATATGCTTAAAAGAGAAGATGGCTAAAAACCTTCCTGCCCAGAAGTCAGGGAGGGGGGCTCTGAGATCGTGATGGAAAAAAATGGAAGCTGAAGTTCTTGGATCAATAACTACATGGCGCCTTAGCTGCTTCCTAATGGTGTTTTATTGTAAACAGTGTCTCCTTAAATGGAAAAAATGAAATATTGGTACATTTCTCAGCCTTTGTAGTAACTGGATGATGCCTAACATAGTATTCATTCCTTTAGAACGTTGAGAGACGGGATATTTGTGAAATTACAAAGTAACTCATTACACACCTATGGCTTTTCCTATAGTTCCGGGGGTGAGGGGTGGGTCTTAATCCAGATGAATCCAGTTTTCATGAACATTTTCAGTTTACAAACAGCCGTCTCAAAATTAACACACACACAAAAAAAAAAAAATAAGAAGGGATATCTCACACCCTTCCTCATTCTAGTGCCGGAAACTCATATGAGCACCTGTGTAAATATAAATGACCAAAAGGGCCTGTGGAGAGAGCCCACAGAGAGTGCTTTCTGTGTGCATCATGCATGAGTGGAGGTCAGAGTTAACTTGCAGAAGTCCATTCTCTCCTCTGACTGTGGGTCCCAGGGAAGACACTCAGGTCATCAGACTTGGTGGTAGCTACCTTTACTTGCTGAACCCCTCTCTACCTTCCTGAGGATACTTCTCATTCAACCCTTCTTAAAACCATCCCTTCCATAGCTGCCCGATGTCCTTCCTCTACTTAGAAACCTCTGGGGGCTGTCTACTACTGCCTACAGATTAAGGCCTAAAGCGATCATTCTGGAGCCCCAGGTTTTTGGTAACTTTTCTCCGGTTTCCCAGCTATACTTCTCTAACTATTCAGTGCCCTCTCTTCAGAGCCACTTCCCTTTCTCATTCCTGTCTGTCAGTCATGTGCTCTTTGCTCCTTTTCCATTTAGTTATCTAAGATTCCACTTCCAGTCCTAGCTGACTCCCAAGTGGCCCTGGTCAGTTCAGGCCCCACTGACTTCCAGGGTCTAGAAGCTATTCTCAAGTGTATGAGCAGTCAAGGCTGTATACTTACACTGCTGGCTGTCCTGTGCCTATGTCTCTCCTCTCTAGATTGGCAGCAGATGGAGTCGAAGTCATAAACCTCACATTTGTGCTTATTTCAG
Seq C2 exon
ACAGATGAAAACAAGACCTGGGGAAGTCCTTATTGATTGTTTAGATTCTATTGAAGACACAAAAGGAAATAATGGAGACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007127:ENSRNOT00000009396:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF072896=DUF1448=PU(4.2=70.0)
A:
NA
C2:
PF072896=DUF1448=FE(15.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]