BtaINT0025280 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003245 | BCAR3
Description
Bos taurus breast cancer anti-estrogen resistance 3 (BCAR3), mRNA. [Source:RefSeq mRNA;Acc:NM_001024483]
Coordinates
chr3:50049795-50055527:+
Coord C1 exon
chr3:50049795-50050447
Coord A exon
chr3:50050448-50055411
Coord C2 exon
chr3:50055412-50055527
Length
4964 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGT
5' ss Score
10.29
3' ss Seq
TCAACCTGTGTTCTTGACAGGTC
3' ss Score
10.89
Exon sequences
Seq C1 exon
GCGGTAAGCTGACTCCTCAGTCCCCAAGTGTGGGCACAAGCCCCTGCCCAAACTCACCAGTGTTCAGGACGGGCAGCGAGCCCACTCTGAGTCCAGCTGTGGTGCGGAGGGTCTCCTCAGACGCTAGGCCAGGGGAGGCGCTGAGGGGCTCAGACAGCCAGCTATGCCCCAAGCCGCCCCCCAAGCCCTGCAAGGCACCCCTGCTCAAAGCTCCCCCGTCCCCATCTATCTGGCTCAACTCTGAAGCCAACTACTGCGAACTGAACCCAGCCTTGGCGGCCAGCTATGATGGGGCATCTAGGCTGCCCTTCTGTGCCCAGGACAGCTACGTGGAGTTGCTGACAGCCAAGCAGAATGGGGGGCTGGGCACCCGGAACTCTGACACCAGCTACTTGATCCTTGATGATGATGATAGGACAAGGCCTTGGAAGCCGCCGCCAGCCCCAGGGGACACAGTGGGGGAGGACCAGGACACATTTGTGATGCCCCTCCTAGAGACCACCTCTTCGTTCAAGCCCAATGACTTTGAGTCGAAGCTGCTTCCTCCTGAGAACAAGCCCCTGGAAACTTCGATGCTGAAACGTGCAAAAGAACTGTTCACCAACAGTGACCCCAAGGTCATTGCCCAGCACTTGCTCAGCGTGGACTGCAAG
Seq A exon
GTAGGTGCCGGAGGAATTTCCAGATGCTTGAAAGGCGGTTCTGTCTGGGCCTCATTCTGCCTTACCTTGTGGCTTGTTTGCTCATAGGACAATGGAGATGATGACCTGGGTGTGGGATTTATTGAAGGGGTGGGAACCCAGGCTGTGACAACCCTTGCCCAGGCAGGAAGCTTGTGAAATTCACCTGGGACAGAAGGATACAGGGCCACCCAGGACCCTGCTCTCCTCCCCCAACCCCTGCCGTGCCCTTCTCCCAGCTCGTGTGGATTTTCAATTCTCCCCCTGCCTGAACTCCATCAGAACTGGTGAAGTCAAGTCCAAAGAAGAGTAGATTGTAGATGAAAATGGAGTTTCTGGAGTAGCAGAGCCTTCGTGGTTTTTATTTCATTATATGCCACATATGTACATTATATATTTATTTTTATTGTTATGAAAATGGTCTTTAGGGTAAAATTTTTAAAGTTACTTGCTCAGTTGAGAAAAAATATAAAACAATTATAAAAGATATCATTTTAGAAAAATTACACAATACAGATTAGGAGAAAAAAAATGAAAACCACACAAAATCCAGTTTCTTGGTGATCACCGTTGTTAACATTTGTTCCGCCAATAGATGTGTAAATAATTGCACGCATATCTATTTGTTTACCACAGAAATGCCACAGGCCTATGCATACCACTTCAAACCTTTTTTGTCTTTCATGGAACAATATAGCATGACTATCTTTCCATGTGACTATATAAACCTCTGTTTACATCATCATTTTTTAAAAAATTATCATTTTTGATGCATTTCTTTTAGATATGGGTGGCTTTTGTTCATAGCTGGCCCCAAGACAACCTCATCCTTCAGAGAGTAATTTCTCGAAAGCAAGCGTTTAAGGCTGGGGTGTGCTCAGCCCACCCCTCAATATAAGGAGACAGATCCCTTCATTTGAGCAACAGATGAGGCCTTAGATTTAAAGCCCTTTTTCATTTGTAGCTCAGTGAAGTCAATTAGCTTCAAAGGTCAGGGCTTATTGAGGAACTGGTTTTCCTAAATAAATTTCCTGGGTCATGAATCATGGCAGGAAATCTAATCTCCAAGCATTCCCCAGGGAGTTCCTCGGTTGATGGAGGCTCACAGGGCGCATGGGACCTCCCAAAGCTGTCTTAAGGAATATTAAGCAGGCGCTGGCTGTTTCGGGGCAAACAGCCGAGGGGCTGCCAGGAATGGGGCTGTGTTGGAGGAACAAGGACTGTCTGTGTGGTTCACTGGGTGTCCTTGGGCAGGGCCCCAAGTGGTCAGATAATTTTCCTTGTTAAGACCTTATCTCATTCAGAGGGAGCTAAACCTGTTTGGACAGGAAGAGGATTTAGTCTCCTGTTCTAGTTGGTATGAATAGGCCCTGGGTCTGAGACAGCAGAACCACACCAGCAGGCCAGGAGCCTGGTGTGAACCTGTTTGAGTTCTCGGTGGAGGAAGCTCCTTGTGGGAACATGGCTCTGGGTTTACAGAACAGCCTAATTTCTGGGAGTAAATGAATGCTTCCCCGCTGTGTTCTCAGGCAGGACTTGGTAGTAGTCTAGGAGGAGGTGAGAGGCCCGACTGCTCTTCACAGGAGTCTGGAACCTTCCCACTGCCTTGGCAGTCTGTTCTCAGCTGAAGGAATGTGTAGCCTCCTCTTTGTTCTGTTTCTCTGTCTGCATTCTGTCCTCCTGGTGGGGGTCCCACTCCCCCCCGTATGCCTTTAGGCCCCCCTGGAAGAGGCGCTGGGTGGAGCCCCCAGGCAGTGAGGCAGAGACCTGAGCGGGAGCCCCCTGACGATGAGCCCACCCCTAGTCCCCAGGGCGGGGCTGTTTCGTCTTCCTTCCGCCCTCATTTCCTTATCCTCTTCCTGAACTACTGACTGCAGGGCTTTGCCAACAGAGCAGGAACAGCAAGCATCTCTTAAGAAGTAAAACAAAGGCTGTTGTCACCTAACTGACTCTAACTGCAACCAGACCAGCCCACCCGGAAGCCTAGAGCTGGCCTGGGCAGCATCCAGGGCCCAAATGCTGGTTCCCACCTGTGCCCAGAGCCCAGCCTGTGGGGGCTGTGGGTGGTCCTGAATGCCTGGAGGCAGCAGGGCAAACCCCTTCGCAGGCTGGGGCTGGGTGGGCGTCCACTGAGCCGCTCCCACCCTGTGAATGGGTAACGCTCTGCTTTACCCACTTGTCTCTGCAGAAGCTAGAAGGAGACGGGCCCAGTGGCCAAGGGCCTGGCCTCTGGGGGTGAGCTACCTGAGTCTAACCTCCCCCCCGACCCCCCGCCCGCCGCCTCTGAGTTTCTAAAGGGAGAAGAGCACCACAGTCCAGGTGCTTGTGAAGACTAAAGCCCTCATACAGTGCCTGCCCCAGACAGGCTGAGTGACGGTTCCCTAGTGTTATGTATTGAGCCTTGATTGAACACCAACTGTGGGCCAGGTCAGGTCAGGCCAGGTCATGGTGGGAGAGGCAGGAGCGACAGTGACATAGAATTCGGACCACGGTCCAGGTGGGAAATGCTCTGCAGGGCCTCCAAGGTACCGTCTCAAACATAGTGGAGGGAGGGGTCAGGGTGGGGATTTCTGAGACAAGCTTTGAAGGCTGAATAGGAGTTGGTGATGCAGAACACAAAAGCATCTTCCAGGTGGCAGGCAGCACACACTTGCAGAGACTGAGAGGCCCGGAACCATGGGAGATTTTATGTTTATGAAGGATTCACTCTGGAAGGGTAGTGAGGGAAATGGGGTCTGTAGGGGGAGGGCCTGGCAAATCTGTCTGTCTTTGTTTTTAAATCTCTACTTCTGGGCTCCTTCCAGGTTGCTTCCTTCAGGGCACTCTGCAGTTCAGTGAGGGAGACAGGCCCATAAGTGCAGAGTGCCCATCAGAGTCCTCTACGGAGGGCAACCGAGACGGCGACCTCATTTCTCGGTAGATGGTTCCTGGCAGCTGGGAAGAAGGCCAGCCAGGCTCCTGTCGGGGCTCCACTGGGTCACCACAGCCATTCCCCAGGCAGTCGGATGAAGAGCGGACAAAACTAAGAGACCCTGCAGAGCCAGGATGGCTAAGATCAGGAGAGCAGAAGGCAGCCGGGTCTCATGAGGACGGGTGTCATTCTGCCCCGCCGGGTCCAGCTCAGAGTGAATCCTCTAGAAGTGCTCATCCTTCCTCTCCCTCTCTGAGCATCATGGCCCCAGGCTTTCCCAGGAGCCCTAATCCAGGCTGCTCTGTGACCTCAGGACCCCTTGTCCCAGAGCTCAGCCTTGGGGCAACCAGGTGTTGGCTTTTCCTGATAATACGTCAGGAAAGTGACCAGGGGACTGCATGTTTACACTGAAGGAAAACAGGCAAGAGGGGAATACAGCTTCCAGAATAAAAGCGAATCAACGACAAGCCTGTGACTATTACAGAGTGTGTGTGGACTGAATGTGTTAGGTTTGGAGCCTCTGACAGGGCAGATGTCTAAACAAGCAAAGAGTGTGTGACTGCAGGTGACCAGGGTGTCCATCTCGGCTGCCTTGTCATGGTCAAGGTGTAAATCTCTTTCCAGAGATCGGGCCAGAATTCTTCCCCCTTCCACATGGCCAGTGATTCATAACTTAGCTTTGTAAATAGCTCGGGTTTTAGGGTCATTTGATCCTTGGCAAAGTCCTTGAGGAAGGTAAACTCAGCAGTTGTTTTAGAGAAGGGGAAACTGAGGCCGAGAGCAGATGAATCCTGCATCTTATTCTGGAGTCTGCACTGGACAGCTCATCCCCAGGACTGATGGTGGTGCCTTTGCTCAACTACAGAAGTTAAAGGTCAAGGTTAATATCAGCTAAACTGCCAGATGTTTTTGGTGGACTGTTATGAAGACACCTGGACTGTTCATATGCTCAGGATAATTATCGTGGAGAACAACTCCACAGGAACGAGGAAAGGAATTGTCCTGTGTCTGCCACATGTCCAGGGATGGTTTGACCCATTATATCTGCTAGTTGGACCTCCCCTGGTGTTTTAGCAGTCAAGAATCTGCCTGCAATGCAGAAGCCACAGGAGATGTGGGTTCAATGGGAAAATCCCCTGGAGGAGGGCATGGCAACCCACTCCAGGATTCTTTCCTGGAGAATCCCATGGACAGCCTGGCAGGCTCCAGTCCATAGGGTTGCAGTCGGACACAATTGAAGCGACTTAGCACACACACACATCTGCTCATTGCACTGTTAGTATCAACATATCAGTGCTCTGTGAGTGTCACCAGCCCCGTTTTAGAGATGCCCTGACTCAGCTGTAGCATTTGGAAGTAATGTAATAACTATAAGTGGTTAACTAATACCTGATTCCAATAAGCTGTGATCACACACTGGAACTGAGATGGGGAGTGCTGACTGGGACAAACAAACCAGATTTTCTTTAAGGAAGACCTCTCAGGGGGAGAAGTGGGTGTGTTTGAGACCTCAGGTTTCACATAGCCGTACATGTTTCTAATAGTTTCCAGATGTACAGTGCGTTTACTGAGCCCAGGAGAGGCGTGATTACGGGTAGTAGGAGCCAGCCCTGCCGTTAAGCGAGAACATAAACGGCAGAGCCTGCAGCAGAGTGGCACTTGGACGCAGCTCCACTTTTCCACTGCCGGGGATCAGTCTGCTCCGTGCGCACATAGCCCTGCTGTTGGCGGCAAATCTAGCAGCAGGATCCAGCCATGTTAGACACAAGCTCGAAGAACCACACTGTTCTCTGGCTGGGCAGAAACACCAAATCTGCAGACCAATCTAGGTATTTTCCTGCCAGGTTTTACATTCCAGTATATGTATCAAAAGCCTCCAAATAGTGTATTAAGACTGTATTTTCAGATGCTGCTGCTCAAAAAGAAGTGCCACAAGTCAAGTGCATCCACAGTGTCCCGGTTTAGTGTATTTCTTTCCATGTTCGCAGCAAGCCCACTTCCTGGTCCAGTTCATTTCAACCTGTGTTCTTGACAG
Seq C2 exon
GTCGCGAGGATACTTGAAGTCTCGGAAGAGATGAGGAAGAACATGGGCGTGAACTCAGGGCTGGAGCTCATCACCTTGCCTTATGGTCACCAACTGCGCCTGGACATCATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003245:ENSBTAT00000063777:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.610 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(8.5=7.8)
A:
NA
C2:
PF0061714=RasGEF=FE(19.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]