DreINT0037038 @ danRer10
Intron Retention
Gene
ENSDARG00000016981 | bcar3
Description
breast cancer anti-estrogen resistance 3 [Source:ZFIN;Acc:ZDB-GENE-080513-4]
Coordinates
chr8:15053947-15057108:-
Coord C1 exon
chr8:15056405-15057108
Coord A exon
chr8:15054063-15056404
Coord C2 exon
chr8:15053947-15054062
Length
2342 bp
Sequences
Splice sites
5' ss Seq
CAGGTAATC
5' ss Score
6.99
3' ss Seq
GCTGTGTCTTTGTGTTACAGGTT
3' ss Score
10.87
Exon sequences
Seq C1 exon
GCTCCAGGCCGCAGGCTCAGGTTCAGCATATGGAGCACCAGCCGTGCCCCAAATCTCCGGTTTTTCGAACGGGAAGCGAGCCAGCACTGAGTCCCACAGTGCCACGCAGAATGGCCTTTGACACTCTGCCTGGTGAGGCCATCCGCGGCTCTGACAGCCAGCTGTGTCCCAAACCACCCCCTAAACCCAGCAAGGTCCCCACAGTAAGAGTACCGTGCATCCCAGCCCTGAAAACCCTTGTCGTCCCACCTGTCCCTCCAGTCAAGCCCCACAAGCACAGACCTTCACTCCAGCAGCAGCAGTCAGGCAGTCCAGAAATGAGCTACTGTGAACTGAGTCCATGCAGCCCTGCTGACTGGGAAAAGATGAACAGCTTACAGGCTAATGGATATGTGGAGAGGCTAAAGACAGACGGCAGCATTAAACTAGACCGCAGCTCCTACCACAACGCCATTGAGGCCTTAGACAACGACAGCGAGGAAGACACCGAAGAGGATGCGGATAAAGAACAGAACGGCAAGAAAGCTTTCCAAAAACCTGTGTTTGAAACTGAATCAGCGTTCAGACCTGCAAATGTCAACTTCAGGCTGCTGCCTAAGGAGAACAAGCCTCTGGAGATGACGGTGCTGAAGAAAGCCAAAGAACTGCTGGTCAGTCAGGATCCAAAGACCATCGCCAAACACATCCTGCAAGCAGACTGTCAG
Seq A exon
GTAATCTTCATCATCCCTGGAGGCAATATGAAGTCAAAGTTTATTAGCTACTTAATATGCATCCTGTATTATTGCCAAATGACTAAAGAATCCTTTATAAATATACTATTGCTGATTTTTAATTCCTGCTCATTCATAGTTTATTAAAGGTTTAATTACTTGCATGTCTTAAATGCTAGTGTACACTTTACAAACAGCCACATTAAAAGCTCTTTTACTACGGGGCTTATATGGAATATATACAGTAGTCAGCATTTGATATGGATCATTACCTTTCGTCAAACTTGTCCTAAAACTACATCTATTCTTTTCCTAGTACAATTTTGACATGATTTATATTGACTTCAAATGTTGACTACTGTACTTGCATGGAATGCTTGATTCTAGTTGGCCGATGAACATTCTAATATCCTGCAGCACATCATGATTTTCCCAGGTACAATGCGATCCTGGATTAATATGTTGATCCTGGAACATCAATTTTGTGGGAAAATGCAATTCATACATAACCATACCACTTACCCAACCATAACTGTAAATTATTCCCAATACTCATGTAGAAGTGCATAAACCTAACCATAAGCCTAAACTAGACATAAACAGTAAACATATCTCTTAATTCTGATAGGCTGTTTGAAATGTTGTTCCAGGATCAACATACAGTAGATGTTAATCCAGGAACATGTCCTACTTGTTGAAATCAGGTTAGGGTATTCTGCACTCTTTTGCTTCTGGACCACATTACGGTTCCCTGCAACTACGCTGAATTATTTAAGTTATTTCACAGCCCACAACTTTCAAGTCAAATGAAAAAAAAAAAAAAATTAAAGCTTTCGATGAGATGTGTGGAAATAAAATAAAAAAAAAATCTGACAGATGTCTTAAAAGGCACCTATGATGAAAATCATTTTTTGGAAGCTGTTTGGACAGAACTGTGTGTAGATATAATGTCACAGTCATATTGTCATGATATAAAGACAATAAGTCTCTTTTAAAAATTTTCTGACATTAAATCAATCATCAAATGCGATCTTGTTTTTTTAAAACAGTGCATGTTTGTAATAAAGACGGTAAAATCGATGCAATTCATCATCACAGCCACATGTCAGTCCAATTATAAAAGAAGACACTTAAATCCTGGATTGTGGACGTTAAATCAGGTTTATTTTCTACATTAACATAACGGATATTCATACAGCAGTGGATAATAACATGTATCCTGTTACATTTGCTGTGCAAAAACAGTGCAAAGTTAAACTATGTGTGAACTTTATAACGACTCATCATTGCAGAAAGGCTTGAATTAACGCCACAACAAATACATCAAATAATCATTGGGAAAGATCTTACTGTAGTATATCTCCCAAACATTACATGAGATCTCCCTTCATGTCTGTCACTGTGCTGTTTATCTGATGTAGCCGATGCAAAGATTGAGACACTCTGAGAGGCACGTGGGAACTAGGATTAAAGGCACAGGCAACAAAAACAGATACATAGTGTTCAGAGCAGAAAATTCCAATTTTCTAAAAGCTATAATAAATCATCTGATAAGTATTTTAAACTGAAATTTTACAGACACATTCTGGAGACACAAAACACTTCTCTTAAATCTGGAAAAAGGGGTAAAATAGGTGCCCTTTAAAATAAAATATCTGAACAGTGTCTTTAGGTGTGGTAATCATAGTATAAGCGGAATAATTGACCCTGCTTGATTAAATAATGAAAAACACACACACCCAAGGTGTTTCACTAATATTATTAATAACTTAATGGCCCGTCATCAGCTATTCTTCACATATCAGCTAATATAATATTAACCACAGAACGGATACTAGACTGTACATCAGATAGCTTTTGATTTCAATAAAATGGAAGCAAAATTTAAAAAAGGAAACCAAACATAGAACAACAAAAGGAGAAAAGTCAAGATGAAACAGAATTAGGGCTTGCCCCCCCACACCCACTTGCTGAATACAATCATGAGCAACCGCTCTGTAATTAGTCTCATTATATGACTCAGCCTATTCTTCAGGTTAGAGACTGGTTCTTCCAGCCAACCAGAGGACCAGAGCACAGTCGTGCAGTGGCTAAAAGTGGACGAATCCAATTTTATAAAGGCACACGTGACTCTCCACATTGCCTTCTGCTTATGAAAGAGGCTTCAGAGTGTTTGTCTGTGTATTTGGGAATTACATCTTAAGCCGTTTCATTAAATCAGTCACAGGACAACATTATGAACAAAAAACAAAACAAAGTAGACTCTATGCAATCACTGCTTTACTACTGTTGATTAGGGATGATACAACCTTTAATGCTAATGCTGTGTCTTTGTGTTACAG
Seq C2 exon
GTTGCCAGGATACTGAATGTTTCTGAGGAGGTGAAAGGTCAGATGGGTGTGAGCTCCGGGCTGGAGCTGGTGACCCTTCCTCATGGACGACAGCTGAGGCTGGACCTCATAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016981:ENSDART00000138855:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(10.1=7.2)
A:
NA
C2:
PF0061714=RasGEF=FE(22.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]