GgaINT0035719 @ galGal3
Intron Retention
Gene
ENSGALG00000005816 | BCAR3
Description
NA
Coordinates
chr8:14555567-14558187:+
Coord C1 exon
chr8:14555567-14556204
Coord A exon
chr8:14556205-14558071
Coord C2 exon
chr8:14558072-14558187
Length
1867 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TCAAATTTTTCATTTTTCAGGTG
3' ss Score
10.84
Exon sequences
Seq C1 exon
GTTCAAGACATTCATCTCGATTACCTGAAGCAGATGCTGACTCCTGCCCAAGCTCTCCTGCATTTAGAACAGGCAGTGAACCTTCTTTAAGCCCCACAGTTGTTCAGAAAGTCACTTATGATTCACAAGTAGGAGAAGCTCTTAGAGGATCAGACAGCCAGCTCTATCCAAAGCCTCCACCTAAACCCAGCAAAGCAACCCTGCTGAAGACCACAGATTCTCCTATGGCTTCCCATAGCTCAGAAGGGCACTACTGTGAGCTAAGCCTTGTCAGAGATTCTGCAGCAACAGAACACCTATGCCAGAAAAACAGCTACGTGGAGCATCTGACGCAAAAGGAGAGGGGAAGGCAATGTTTCAGGAACTCTGAAACAAGTTATTTGATCCTGGATGATGACCATACAGTGAACTCTGCAGGTCCTTTAGATGTCTCAACTGAGACAGCTGAAGAAAACAATGTGTTTTCTGCACCTCTTTTTGAGACTTCATCTAGTTTTAAACCAAATGATTTTGAATCCAAACTACTTCCTTCTGAAAACAAGCCTTTGGAAACATCAATGCTAAGAAAAATTAAGGAGCTTTTCACCAAGAATAACCCAAAGGTTATTGCACAGCATATTCTTAGAATGGACTGCAAG
Seq A exon
GTAAACAAAACAAAACAAAAAAAAAAACAAAAAAAAACAAAAAAACACACACACACACATATATATATATATACACACACACATATAGATATATATATATATATATATACACACACACATATATATAGATATATGTATATATATGTATATATATTCCACTATATATTGTGCAAACATAGTTATTTTTTTCAAAGATTAGATTTGAAAAACAGGTAGATTTGCAGCTAGCATATTAAATGTACTGACTCACTTGCAGGAATTTTCGGGTGACTTTTTTTTTTCCTCTCCTATTTGAAGAACAAGAATGTCCCAGATCCCTTTGGACTAAACATGTCTCCCCTCAGCCTTGGCTTCAGACTCAAATTCTCAGTGTTCCATACATCTCTTTAATCTCCTATCCATTGCTGTGTGTTCTCTGATTCTTGCTTAGTGGTGGCTGCTGCTAAGTGAAGTTTCATGGAGACATGGTGACTAAGAAAAACTTGGTGTAGGGGCAAGTATTTTAACTCAGAGCAAGACAGCAGCTCTCTAGGATACTTTCCTGGGGAGGTGTGTTTTGAAGCATTCTTCCACTGATAGCCTCTTTATTTTAAATCCTGTGAACTCGGGAGTGGGGCCAAGGAGACTAAATAGCTGGTAGTGTGGGAACGCGTACAATTAGTTAAGGAGGGGCTGGAGTCTTAATTATGCAGATTTTTGTATATTGGAGCAGGAACAGTTGCTAGTAGCATGCACAGAGAAGTCTGTATTGTTGTCTTCATCTTGTGGAGTTGAGAGCCAGTGACGGTCATTCATGGATAACTTGCTGGTTACTATTAAACTGGTAAAAACTGTTACGATACAATGAGACTGGCATGCCATCTGGGCCAGAATACATGCTTTTTACTGCAATCTGTGTTAAGGCTGAAGACCATAGGCCTTCTTGTGGCATCAGAAGTTTTCCTCTTAAATAACAATATCTGCAGTTCTATAGAAACTTTCATTTGTAGAAGCACCACCTCTTCATTAAGTGGTGGAGTGAGTCACAACCACTTGCATGTTGGAGAGGAATCTTTGTGAAGTAATTGTGATCTGCATGTATGCAGGGCCTTTGTGTCACTCCTGCTTCTCCAGAAGTGAAAAAAGTTTCTCTGTGGTACTTGATATTGCACCAGTGATGCTTGATGCACGGCAGATTGTTTTTCTTTTCATAACCAAAAAAGACTGCTGATATGTGTATTAGAGGCAGATTGGTTTGTAAACATGTCAATGTATAGGCCTTAATCTAGCAGATAACCTCACATTATATTAATTTGGTTGTGCTTGTAATTGTTGCTAATTTTAACCATTAGCTAATAGTGTGTGCTTAAAAACTAGGGGCAAATCAGTGAGGGTGTCAGTTTTCGCATACTGATTTGATTAGGCACTCAACACCGCGTCCTCCCCAAAGTCCTTTTACTGGTTAATCCTTATGAGAACCCTGTAGTGTAATCTAAAACATTCTGAGCAATGTTCTCCTTTTAGAAAGAAGGAAAGCTAAGCAAATGCAATCTTTGAGGCCAAAGAGCAGTGCCATGTTGATAAGGTCAAGGAAGCACATTTCTTGGAGCTTGCATATGGATCTCCTTCTGGAAGTGGAGGACATGGTTTGACAAAGTATTTTGGTCACACCTTTTATGTTTTCTTATTATGGTATCATTGTGCAGAAAGTTTTTTTGTGTGTGTGAGACAGTGGCTGTGCAGGAGTTGAGTTGTTCTTGCATTACTGCATTCTATTGTCGTGCACTCCTGTTTATGTCCTAGAACTAACCTAGAGTGCTGCTATGTGGAAAGTTTGTGGGTTTTTTAAGTAGTTTAAAAATTCATGGTCAAATTTTTCATTTTTCAG
Seq C2 exon
GTGGCAAGGATACTAGAAGTTTCTGAAGAGATGAGGAGGATTATGGGAGTGAACTCTGGTCTTGAACTCATTACTTTGCCTTATGGACATCAATTGCGCCTGGACCTAATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005816:ENSGALT00000009337:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.535 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(8.1=8.0)
A:
NA
C2:
PF0061714=RasGEF=FE(18.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGTGAACTCTGCAGGTCCT
R:
TAGGTCCAGGCGCAATTGATG
Band lengths:
345-2212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]