RnoINT0025023 @ rn6
Intron Retention
Gene
ENSRNOG00000013737 | Bcar3
Description
BCAR3, NSP family adaptor protein [Source:RGD Symbol;Acc:1311688]
Coordinates
chr2:226662397-226668862:+
Coord C1 exon
chr2:226662397-226663049
Coord A exon
chr2:226663050-226668746
Coord C2 exon
chr2:226668747-226668862
Length
5697 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TTTCTCCTTGGCTCCGACAGGTT
3' ss Score
9.63
Exon sequences
Seq C1 exon
GCTGCAAGCTGCCACCCCAGTCTCCGAGTGTGGACACAAGCCCTTGCCCCAACTCTCCCGTGTTCAGGACTGGCAGCGAGCCCACTCTGAGTCCGGCACTGGTACGAAGGTTCTCTTCGGACGCTAGGGCAGGGGAGGCACTTCGGGGATCAGACAGTCAACTGTGCCCCAAGCCACCCCCAAAGCCCTGCAAGGTGCCCTTCCTCAAGGTTCCTCCCTCTCCATCTCCCTGGCTAAACTCAGAGGCCAACTACTGTGAACTGAACCCTGCTTTTGCGGTGGGCTGTGACAGGGGAGCCAAGCTTCTCTCACAGGCTCTCGACAGCCACGAGATGCTGCTGACAGCCAAACAGAATGGGGCATCGGGTCCCCGGAACTCTGGCATCAACTACTCGATACTTGATGGGGATGACCAAGGGAGACATTGGGATCCCCTGGCCGTGCAGACGGATGAGGGTCAGGAGGACGAGACCAAGTTTGTACCACCTGTCATGGAGACAGTGTCATCATTCAGACCCAATGACTTTGAGTCGAAGCTTCTTCCTCCAGAGAACAAGCCCCTGGAAACAGCCATGCTAAAGCATGCCAAGGAACTGTTCACCAACCATGACGCGAGGGTCATTGCACAGCACATGCTGAGCGTGGACTGCAAG
Seq A exon
GTTAGTGTTCTGTGGCTTTCCCCTTCCACTACTTTTAATGGGGTCTACCTGGCCATACCCCGCCTCGCTGGGTAGACGCTTTGTCATAGGGAAACAAGCCAGACAGGCACACAGGTGTGGAGATTGATTTGCAGGGTGGGAACCACTGTCAGAGCAACCTTTGCCCGGCAGGAAACTGGTAAACTTCACCTTGGACAGAGGGAGGCCAGACCTGCCGCTGAACCCAGCCTGCTAAAGACAAGAGTGTGACTCCTCCTCCTCCTACCTCCTTAGTTAAGAACTCCCCTCCTCCCTGTCAGAACTGGAGCAGCTGGGGGCACTGGAGGGCAGCAGAAAGGAGGCCAGACCTGCCGCTGAACCCAGCCTGCTAAAGACAAGAGTGTGACTCCTCCTCCTCCTACCTCCTTAGTTAAGAACTCCCCTCCTCCCTGTCAGAACTGGAGCAGCTGGGGGCACTGGAGGGCAGCAGAAAGCCTGGTTGCTGGAGTGGCAGGACCTTTGCTATTTCATTCTGTCATGTGTTATACTTACTTACATGGCGTATTTATTTTATTTCCCATATGATCTCTTATGATAATCATCTTCAACTTGATTTTTTATTACAAGAATTGCTTCAAGTTACAATAATAATTGTAAGATGCAGATTAGAAGAAAAGATTAAATCCTACAAAACCCAGTTTCCAGGATCTGTGAGGTGGTTCGTCAGGTACATAGCTGGCTACCCAGATACAACCTAACACGGTCCCAGAACCCTCATGGGTGAAAGAGGAACAGCTTCTGCAAGTTATCCTCTGACCTGTAGACACACACACACGCCCCAAATGTAATTTTAAAAATCTCAAAACTCAGGCTACACTAATGGCTCAGGGGTTAAGAGCACTGGCTGCTCTCCCAGAGGTCCCTGATTTGATTCCCAGCACCCCCATGGCAACTCTCAACCATCTATAACTCCAGGTCCAGGGGAATCTGACACCCCTTTCTGGTGTCTATGTGCACCAGCCACACATGTGTTTCATAGACATAAGTCAGTCATAAAATAAGGTAAAATAAAAAATTAAAAGCTAATTTTAGAAACTAACTTCCTAATGATCACTGCTGACAGTGCTTGGAATGTGGATGCTGGGCCTGTAAGCATTTGTAAATAACACTGTTTATCATACATAGACACAATTCTAAGCCTGTGACTATCATTCCACATCTATCTACATTTTTATCATCCTTGTTTTTTAAAAAAAGATTTATGTATATGGGTGCTCTGGTTCATGCACACCAGAAGAGGGCATCACATCCCATTACAGATGGTTGTGAGCCACCATGTGGATGCTGGGAATTGAACTCAGGACCTCTAGAATAGCAGCCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCCATCTTCATTTTTAATAGGGGTATTTGCTTCAGGAGCAGATGATCTGTGTATATAAGCTCTCGGTATCCCTTAGATAACGGGCATCTTGGGCATCTTGGGCTTAGCCCACCTTCTTGGTATATAGCAGTTGGTACTTGGGCATTTGAGTGACAGATAAGGCCTCAGTGAAATCTGAAGCCCTGTTTCATTCAGCTCAAAGAAGGCCATGAGTGTCAAAGGTTAGGTTTATTCAAAAGCTGGATTTTTCCTTCTTGTGTCAGGAATCCTGGCTGTAAATCTAATCTCCTAGCAATACCCCAGGAAGTTTGGGGACTGATAAAGGACTCCAAGAATAAACTGGAGGGTCACTGAATAAGCAGGGTAGAAAGAGCTTTTCCTGAATTCAGGACTGGAAGGCTAACCAGATGACCAGTATAAGTCAGTGCCTGAGGCTGGGGGTATCATCCATGCTCATATAGGAAGGAGGGGGTGTTAAGCAGGCTCCAAAGGGGAAAGCCAGGGAATGCGATTGCTGTGAAAGAACAAGACTTGTTAACTGGCGACGGGGCATCCTTGTGCAGAACAAAGTAGGTAGGCAGAGAGTTTGCCATGTTCAATCCTTACCTGCTGCCTGGTGGTGGCAAGAGGACTGTGAGCTCCTGTGCTAGCAAGTCAGTCAGGCTGGGCCCTGGGCCTGAGCATTCAGTAACATGCCAGTGAGACTCACACCTAGTGTGAGCCTGCCTGCTCGCCCGCCCGTCCACGCACCCACAAGCCCCAGGAGGAAGGAAGATCCTTGTACACACAGGGTCTGCAATTACAGAACAGCGTCTTTCCTGGGGTGGCAGTGAGCCCTTGGCTGTCTATGAGGGCTTGCGTTTTCTAGAAGGAGAGATAGGGGGGAGATGCTCGCCCGCTCCTTACAGGTCTGGAACCTTCCCACTGCTTTTGACGTCCTTCAAAGGAGAGCCCAAGTATGACGTCATTTGACAAGTATGCAGTTCTCCTCCTTTTCCTGCCCTGCGCATTTTGTCCTCATAGGCCTCCTCCCACATCTGGCTTCAGGTTTCATTGAAAGATCAGTTTCTTGGGAGTCCCCAGCAAGCAGGGAGAAAGCAGCCTGTGCACACTGGCCTCGTGGGCAAGGTTCTGCTCCGCTGTCTGCATTCTTCCCTCCCATCTTTCCTTCCTTGATCTCCCAGAACTACTACCAAGCAGAGCCACTGTCCCCAACAGGAAAACGCCTTTCCCACTGTAGACAGAGCGGCCATGAGATGGAGCTGCCCAGGATCTAGAAGGAGGCACGGGGCAGCATCTGGGGCCATGTGCCCATCCCCACCTCGGCGCAAGGTTCAGGGAAGCTGCTTATGAAGGGTGTCAGGACAGTGGGTGGATCCTAGTACACCGGAAGCTGGAGGCCATCAGTGTCCAGCACCCTGACTCAGGGCCCCTGCCACCTGCAGATGGACACTGCTTGTGCCTCACCCGCCTGGCAGAGCACAGCCACCACTACTGTCTTTGAATGTGGAATTCAAGTCTATCAGTTAAGAACTTGGTCTTTATGGATGAGTCCAAATCCCACCATTGTCCATTAGCAGCTGCCTGGCTCTTGTTCTCTCTCCATTTGTGGAACGGAATACCACCTACCCAGGTGGTCAGCAAAGTCTGAGAGAATGTATTTGAAGCCCTGGACACTTTGCCTGGCCCAGAGTGAAGCACTGAGTGTTGATCATTGATACTGTTCAGCCTTGATTGAGCGCCTGCCGCGTGCGTGTCAGGCTCGCTAGCACCTCCACCCTGGATGGACCTGCTGTGTGGTGGGAATGGGGTGAGAGGAGATGTGATGCTTGGTCCACAGCATGGCCAGGAAATGCTCTGGCAGGTGTGGCTGGACTCCCTAGGCTTGAGCAAGGGCTTGAAGCTAGAGATCATGGCCAATGGAGATGACTTTGGAAGGCTGAACAGTTGGAAGGTGAATGCAGAAAGTGTCTTGCAGGCTTGGAGGCACATGTGCGATCAAAAACTGTGGGGATGGGGGTTGGTCTAAATGGGATTCATTTCTGGATCAAAGAAGGGGGGCCTGGGATGGGTTGGGAAGAGCCTGATTGTTGTCCTCAGTGTTTCCAAGTTTCTGCCTCTGGGCTCATACAGGATCTTGCCATTACAGCACTTTGCCATCAAGCTAGGGAAACAAACTGATGAGTGTGGGCGCAGGTCTGAGTCCTCTGTGTTGGGGACAGCAGATCCAGAACACCCAGTGATCGGGCCTGGCGGCCTCTTGGTAACTGAGAGGAGGGCCAGGCCAGGTACCCATCAGGAGCCCTCAGGACACCAGTGGTCTTGAAGTAATGTAATGTAGACGAATGGGTCCAAAAAGTGGCGGCAAGTAGGAGAACTAGAGTGCCTTGGCTTAGGGAATTCATGCTTGCCCTGCCACAGTAAGCACATCCTCCTCCTATAATCCCCCAGAGGACACAGCCTAGACCCCAGTGTGGACTCAACATCCCATAGTCTTCTAGCCCAGCCCTGGAAAGTATGTATAGCTCAGGAAAGAGACCCGATGAGGGTTGATTGACATTTCAGATTGAAGGCTTCTTGCTCTCAGAATGGAGCCCTTGGAATGCCTACTAGTGCTTCCAGAAGAAAACTGTGTCAATGGCGAGCCTTTGAGTCTTACTGCATAGAGGGTGTGGGTTGCAGTACACGCGTCACAGAGATACAGGGCTTAAATCTCTGGCAGGATGATGGTCTAAACACGTGTAACGTATGGAGTGCCTTGTCGTGGTCAAGGTGGACCTCTCCTTCCTGAGACCTGGCCAGAGTTGCTCCCTTTCTACATGGCCAGTGACTCACAACTTGTACTTTCAAATAGTCATTTGAATCCTTAGCAAAGCCCTTCAGAGAGGCAAATCTAGACTGCAGCCGTGAGCCTAGAATGAATCCTGAAACCCGTCACCCATCTGGTGCCTGCCACATGTCCAGACTTGGTTAGACCCCTGCGTCCCAGGGTCACACTGCAGTACATCAGTGAGCCTGCGTGGCTCCACTGTAACAGCTCAGCGTGCTGTATTCTAAGAAATGGTCAGGTCTGACCTCCGATTCCTTTCACATGTGATTACACACGTTAGAAATGAGATGGTTAAAAAAAAAGTCACACTGTAAGAAACAAAAAGAATGGATTTAATCAATGAAGAAAAAAAGCAAAGAATTGGGTTGAGATGAGAGCTGGCTTGGACAAAGAAAGATTTTCTTTCAGGGAAACCTCTGTGGAGAAGACGTGGGTGTGTTGGTTTCCAATCACCACATATGTTTTTAATGGCTTCCAGCCGTAAGGTACGCTTACTGCACCCAGGAGAGGTGTAATTAGGGGCAATAGCAGCCAGCCGTGGCTGTTAAATGAGAACATGAATGGTAAGGCCCAGAGCAGAGGGAACTTGGACGGCTCCACTTTCCCACTGCAGAGACTGGTGGGCTCCCCACACACTCACAGCCTTCTTGTTGGCAGCAAAATGTCTTGCCAGGATCCAGCCTGTGTCAGGCCAGAGCTGCATAAATGACTAGTTCCCTGGCTGGGCTTGGACGCGTACCAAATCTTTAGGCTGTATAGACTGCTTAGGGGTTCCAGCAGTCCTTTGCCCACTAAGCATGTGCATGTACATGTGTGTTCTTGTTCGTGTGTATGTGCATGCGTGTATGTGTGTGAGTGCTTGTTCACGTGTGTGTGTGTGCATGCTTATTCATGTGTGTGTGCATGTGTGCGCGCACATGTGTGTTCTTGTTCCTGTGCATATATGAGTGTGTGTGCGCACACGAATGTGTACAAACACGTGTGTTCTTGTTCATGTGTGAGATAGCACACATATGAGGGTACATATGCACATGTCAGTGTGTGGAGCTCAGGGGACAACCGCTCAGATGTACTGAGGACCTGGGCTTGCCACAGAGGCTGGCCGACTGGTGAGCCCAGGGGTCCCCCGTCTCTGCCTGTGTTCAGTGCTGAGGACTAGCAGTCTGCCCTACCATGCCTCTCATTTTACGTGGGCCTTAGAGACCAGATGTGTGTTCTCATGCTCATGCAAGCGATGTATAGACCAAACTATTTTTCCCAGCCCCTCACCCAGTTTTATATTTTATTATGTATATTTAAACTCTTCAAATGTCATATATAAGGAACATTTTGCATGCTGTCTCTCAAAGAGATCCAAGCGCCTTCCATCCACAGCCACCCGGCTTCCGTGTACTGTATTTCTATCTTTCCTCGTTGTAAATTAACACGGGCCCAACACACTCCCTGATCCAGCGAATTTCTCCTTGGCTCCGACAG
Seq C2 exon
GTTGCTAGGATACTGGAAGTCTCTGAAGACATGAAGAGGAGCATGGGCGTGAGCTCGGGACTGGAACTCATTACCTTGCCTCACGGACGCCAGCTGCGCCTGGACATTATTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013737:ENSRNOT00000065111:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.606 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(8.9=7.8)
A:
NA
C2:
PF0061714=RasGEF=FE(19.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]