MmuINT0024349 @ mm10
Intron Retention
Gene
ENSMUSG00000028121 | Bcar3
Description
breast cancer anti-estrogen resistance 3 [Source:MGI Symbol;Acc:MGI:1352501]
Coordinates
chr3:122512351-122519378:+
Coord C1 exon
chr3:122512351-122513003
Coord A exon
chr3:122513004-122519262
Coord C2 exon
chr3:122519263-122519378
Length
6259 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
CTCTCCTCGGCTCCTGACAGGTT
3' ss Score
8.57
Exon sequences
Seq C1 exon
GCTGCAAGCTGCCCCCCCAGTCTCCGAGTATGGACACAAGCCCTTGCCCCAGCTCTCCCGTGTTCAGGACTGGCAGCGAGCCCACTCTGAGTCCAGCACTGGTACGAAGGTTCTCTTCAGATGCTAGGACAGGGGAGGCGCTTCGGGGATCAGACAGCCAGCTGTGCCCCAAGCCACCCCCGAAGCCCTGCAAGGTGCCCTTCCTCAAGACTCCCCCCTCTCCATCTCCCTGGCTCACCTCAGAGGCCAACTACTGTGAACTGAACCCTGCTTTTGCTGTGGGCTGTGACAGGGGAGCCAAGCTTCCCATGCAAGCCCACGACAGCCACGAGATGCTGCTGACAGCCAAACAGAATGGGCCATCGGGTCCCCGGAACTCTGGCATCAACTACATGATCCTTGATGGGGATGACCAGGCGAGACATTGGGATCCACTGGCAGTGCAGACGGATGAAGGTCAGGAGGACAAGACCAAGTTTGTGCCACCTCTCATGGAGACCGTGTCGTCATTCAGACCCAATGACTTTGAGTCCAAGCTTCTTCCTCCAGAGAACAAACCCCTGGAAACGGCCATGCTGAAGCACGCGAAAGAACTGTTCACCAACCACGATGCCAGGGTCATTGCGCAGCACATGCTGAGCGTGGACTGCAAG
Seq A exon
GTTAGTGTTCTGTGGCTGTCCCATTCCATTACTCTTAAGGAGGTCTACCTGGCCACACCGCACCTTGCTGGGTCGATGCTTCGTCATAGGGGAGAAAGCCAGACAGTAACGCAGGTGTGGGATTTATTTGCAGGGTGGGAACCACCAGTCAGGGCAACCTTTGCCCAGCAGGAAACTGGTAAACTTTGCCTTGGACAGAGGGAGGGCAGACCTGCCCCTGAACCCAACCTGCTAAAGATAAGCGCCTCTGTGACTCCTCCTTCTACCTCCTTAGTTAAGAACTCCCTCAGCCCTGTCAGAACTGGAACAGTTGGGGGCGAAGGAGGACCACAGAAAGCCTGGTTGCTGGAGTGACAGGGCCCTTACTATTTTATTCTCTTATACATTATACTCATACACATGGTATATTTATTTAATTTCCAATATGATCTTTATGATAATCATCTTCAACTTGATTTTTTTTTAAAAAAAATTGTTCAAGTTAAAAAAATTGTAAGGGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCCATTATACTCATACATTATACTCATACACATGGTATATTTATTTAATTTCCAATATGATCTTTATGATAATCATCTTCAACTTGATTTTTTTTTTAAAAAAATTGTTCAAGTTAAAAAAATTGTAAGGGAGCTGGAGAGATGGCTCAGTGGTTAAGAGCACTAACTGCACTTCTGAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGATTGGATGCCCTCGTCTGGAGCGCCTGAAGACAGTTACAGTGTACTTACATATAATAAATAAATATTTAAAAAAATTGTAAGATGCAGATTAGAAGAAAAGATAAAATCCGACAAAATCGAGTTTCTGGGGTCAGTGAGATGGCGCATCGGGTATATACAGCTGGCTGACAAGCCAAACCCTGAATCCATTCCCCAGATCCCATATGGTTGAAAGAGGGCCCAGCTTCTGCAAGTTATCCTCTGACTGTACACACATTGTGACATATATACATGTGTACACACACACACACACACACACACACACACACACACATACACACACACATACACACACACACACACATACACACACACACACACACATACACATACACACACACACACACATACACACATACACACACACACACACATACATACACACACACACACACATACACACACATACACACACACACACACACAATGAATTTAAAATATCTCAAAACTCAGGCTAGAGGAATGGCTCAGTGCTTAAGAGCACTGGCTGCTCTTTCACAGGACCCCTTTGATTCTCAGTACCTACATGGCAGCTTTCAACCATCTATAACTCCAGGTCCAGGGCATCTGACACCCCTTTCTGGTGTCTTTGGCACCACCCACACATGCGTTTCATAGACATACATGCAGGCAAAACACACATACACATAAAATGAAATAGAAGATGAAAAGCTAATTTTAGAAACCCCCACTTCCTAATGCTCACCACTGACAGTGTTTGGGATGTGGAATATCAGGCTTATTAGCATTTGAGAACAAAACTGTTATACATAGATACAATTCCAAGCCTGACTCTCAGTCCATATCTATGTACATTCTTATCGTCTTTGGGGTTTTTTCCTTAAAGATTATTTATTTATTTATTTATTTTATATATATGAGTGTTGTTTTCATGCACAGCAGAAAAGGGCATCAGATTCTATTCCAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAATTCAGTCAGTGCTCTTAACTGCTGAGCCATCTCTCCAGCCCCATCCTCATTTTTAATAGGGGCATTTGCTTCAGGAGCAGGTGATCTGTGTATATAAGCTCTTGGCATCCCTTAGACAACGGGCATCTTGGGCTTAGCCCACTTTCCTGGTATATAGCAGTTGATACTTGGGCACTTGAGTGATAGGTAAGACCTCAGGGAAATCTAAAGCCCTGTTTCATTCAGCTCAGAGAAGGCCATGAGTTTTAAAGGTTAGATTTATTCAAAAGCTGGATTTTCCTTCCTGTGTCAGGAATCCTGGCTGTAAATCTAATCTCCTAGCCATACCGCAGGGGGTTTGGGGGCTGAAAAAAGACTCCCAGAGTGAACTGGAGGGTCACCGAATAACCTCGGTAGAAAGAGCTCTTTTCCTGACTCCAGGACTGGAAGGCTAACTAGATGACCAGTGTAGGTCAGAGCCTGTGGCTGAGGGTGTCATCCCTGCTTGTAGAGGAAGGAGGGCGTGTCCCTGCTAAGCAGGCTCCAAGGGAAAGAACAGGACTTGTTAACTCTGGTGGCTGGGCAGCCTTGTGCAGAACACACAGGTAGGCAGAGAATTTGCCATGTTAAATCCGTACCTACTGTCAGGTGGTGGCAAGAGAAGACTGAGAGTTCCTGTCCCAGCAGGCCAGTCAGGCTGGGCCCTGGGTCTGAGCATTCAGCACCATGCCAGTAGGCCTGAGGTGAGTGAGATTCACACCGAGTGTGAGCCCGCCCACCCACAAGCCTCAGGAGGGAACTCCTTGTACACACAGGGGTCTGCAGTTGCAGAAGAGCTCCTTTTCTGGGGGGCAGTGGGCCCTTGGCTGTATATGAGGGCTTGAGAGTTTAGGAGAGAAAGAGGAGCTGCCTGCCCACTCCTTACAGGTCTGGAAGCTTCCCACTGCCGTTGACATCCTTCAGAGGAGAGCCCGAGTCTGATGTCACTTGACAAGTATGCAGCCCTCCTCCTGCATTTCCTGCCCTGAGCATTTTGTCCTCTGCCTGGGCCTCCTCCCTGGATCTGTCTTCAGGTTCCATTGAAAGACAGGTTGCTTGGGAGTCCCCAGCAATCAGGGAGAAGGTAGCCTTGGCTCTGTGCACCCTAGCCTCATGGGCAAGGCTGTTCTGCAGTCTGCAGTCTTCCCTCTACCACCCGTGCCTTGATCTTCTCCCAGAACTGCTACAGACACAGGCTGTGCCAGTGTCTCCGACAGGAAAACTCTTTCCCACTGTAAATCAATGAAATGGAGCCAAGTAGGAGGCAGAAGCAGGCATAGAGCAGCATCTGGGGCCTTGTGCCCATAGCACATGGTTCAGGAACAGCTGCTTACTCAGGGCATCAGGACAGTGGGTGGTTCTGAGCACACCGGAAGCTGCAGCCCATCAGTGTCCAGCACCCCAGCTCAGGGCCCGTGCCACCTACAGGTGGACACTGCTTGTGCCTCACTTGTCCTGGTGGAGCACAGCCACTCTGCCACCTGCTGTCTTTGAATGTGGAAATGAAGTCTCCCATTTGGCCTTTAGGGATGAGTCCAAATCCCACCATTGTCCCTTAACAGCTGCATGGCCCTTGTTCTCCTCTCCATTTGTGGAATGGAGTACTCCCTACCCAGATGGTCAGTAAAGACTGAGATAACATATCTGAAGCCCTGGCACTTTGCCTGGTGCAGAGTAAAGCAGGAAGTGTTGATGAGTGTTACATGTTCAACCTTGATTGAGCACCTGCTGCATGCCCGGCTCACTGGCATGTCTATCCTGGACGGACCTACTGTTTGAAGGGAATGGGCTGAGAGGAGATGTGATACAGGAACTTGGTCCACAGCATGGCCAGGAAACGCTCTAGCAGGAGTGGCTGGACTCCCTAGGCTTGAGCAAGGCCTTGAAGCTAGAGATCATGGCCAACCCGAGATGACTTTGGAAGGCTGAGCAGTTGGCAAGGTGATTGCAGAACGTGTCTTGCAGGCTTGGAGGCACCTGTGCTGTCACAAGCTATGGGGACAGGGGTTGGTCTAAATGGGATTCATTTCTGGATCAAAGCAGAGGGGCTTGGGGTGGGCTGGGATGGACCTGCGTGTTGTCCTCAGTGTTGCAGGTTTCTACATCTGGGCTCACACAGGATCTTGCTGTTATAGCGCTTTACCATTAAGCTAGGGAAACAAACCCATGTGCCTGTGGGCTCAGGTCTGAGGCCTCTGTGCTGGGGACAGCAGAGCCAGAACACCTAGTGATTGGACCTGGCGGTCTGATTGCATTTTAGGACTCTAGGTAGCTGAGAGGAGGGCCAGGCCAGGGGTCTTGAATGGGTCCACAGAGTGGTGGCAAGTGGGACTTAGAGGGTCTTGCCTTAGGACGTTCCTGCCACCCTGTTCTGCCACAGTAAACACATCCTCCTCCTCCTCGAATCCCCAGAGGACTTAGCTTTGACCCCAGGGTGGGCTCAACATCCCGCAGTCTTCCAGCTCAGCCCTGGAAAGTATGTGTAGCTCAGGAAAGAGACCTGATGATGGGTGATTGACACTTAATTCCGACCAGGGGCTTCTTGCTCTCAGAATGCCTATTAGTGCTTCCAGAAGAAAAGCGTGTCAGTGGTAAGCCTTTGAGGCTTACTACGCAGAGGGTGTGGGCTGCCGTGCGTGCCAAAGAGGAACAGGGCTCAGAATCTCTGGCAGGATGATGGACTAAACATGTGAGATGTATGGAATGCCTTGCCATGGTCAAGGTGGACCTCTTTCCTGACATCTGGCCAGAATTGCCCCCTCCACATGGCCAATGACTCACAGCTTGTACTCTCAAACAGTCATTTGAATCCTTAGCAAAGCTCTTGAGAAAGGTGAGTCGTACCTGTAGTGGTGAGCCTAGAATGAATCCCGCATCCTGTCCTGGGCGCCACCACTGGACAGCCAGGTCCTCAGCTCATCCCCCAGGGCTGACAGGGGTTGCCTTGCTCAGCTACGGAAGTTTCAGGTCAGGTTTAATAATTGCCTGACTTCCTGATCTTTTTGTGTGTGACATATTATGAAGATCTCTCCACGGCTTGGCATGGTTATGGTAGAAGACAGCCCACCACAGGAAGCACAGAGCACCATCTGGTGCCTGCCACATGGCCAGACTTGGTTAGACCCCTGACTCCCAGGGTCACACTGCAGTATGTCAGTGAGCTAGCATGGCCTCAGTTTAGAGATACAGCTGACTCCGCTGTAACCTTTCAGTGTGCTGTAGACTAAGAAACAGTCAGGTCTGACAGCCAATTCCATTCAAATGTGGTTATGCACGTTAGAAATGAGATGGTAAAAAAGAAAAAAAAGAAAAAAAATTCACACTGTAAGAAACTGGAAGAATGAATTTAATCAATGAAGAGAAAAACAAAGAATTGGGTTGCAATGAGAGCTGGCTTGAAGGAAGAAAGATTTTCTTTCAGGGAAACCTCTATGGAGAAGCCGTGGGAGTGGTTTCCAATCACCACATATGTTTTTAATGGCTTCCAGCCGTAAGGTACACTTACTGCACCCAGGAGAGACGTAATTAAGGGCAATAGCAGCCAGCCGTGGCTGTTAAGTGAGACCATGAATGGTAAGGCTCAGAGCAGAGGGGAGCTTGGATGACACTCTGCTTTTCCCCTGAAGAGCCTGGTGGGCTACACACACACACACACACACACACAGAGCACCCCCCCCCCCCACACACACACACAGACAGCCTGAGGGGAGCTTGGATAACACTCTGCTTTTCCACTGAAGAGCCTGGTGGGCTACACACACACACACACACACACACACACACACACATGCACAGACTTCTTGTTGGCAGCAAAACGTCTTGTCAGAATTCAGCCTGTGTCAGGCCAGAGCCGACTAAATGATAAGTTCCCTGGCTGGGCTTGAATGCGTAGCAAATCTTTAGGCTGTGCAGGCCGTTTAGGAGTTCCGTCAGCCCTTTGCCCACTAAATGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTTATGTATGAGATAGCACACATATGAGGGTACATGTCCGTGTGTGGAGGTGAGAGGACAACCCCTCAGGTGTCCTGAGGACCTGGGGCTTGTCACTAGGCTGGCTCGAGAGCCCCAGGGATCCACCTATCTCTGCTCCTCAGCGCTGATGGTTAGGAGCCCACACAACCATGCCTGTCTTATTACGTGAACATTAGGAATCAAATTCCCGTTCTCATGCTCACACAGCCAGCAATGCATAGACCAAACTATTTTCCCCAGCCCCTCACTCAGTTTTATAGTTTATGATGTACATTAAGATCTTCAAATATCATATATAAGAAACATTTCGCATGCAGTCACTCAAAGAAATCCAGACACATTGCATCCTCAGCCACAGGGCTCGCAGGTACTTAGTTCTTTCTTTCCTCGCACTAAATGAACCCGGGCCAACACACTTTCTGATCTAGCGCCTTCCTCTCTCCTCGGCTCCTGACAG
Seq C2 exon
GTTGCTAGGATACTCGAAGTCTCTGAAGACAGGAAGAGGAGCATGGGTGTGAGCTCTGGGTTGGAGCTCATTACTTTACCTCATGGACGGCAGCTGCGCCTGGACATCATCGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028121:ENSMUST00000029766:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.714 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0061714=RasGEF=PU(8.6=7.8)
A:
NA
C2:
PF0061714=RasGEF=FE(19.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types