BtaINT0025560 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020566 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr17:73725761-73730997:-
Coord C1 exon
chr17:73730812-73730997
Coord A exon
chr17:73725869-73730811
Coord C2 exon
chr17:73725761-73725868
Length
4943 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CTCTCCCTTCCTCCCCGCAGGCC
3' ss Score
13.95
Exon sequences
Seq C1 exon
CCCATGAAGCCTCTGAAGGCGGCTGCCACCACCTCTCAGCCCGTGCTGACGAGCCAGCAGATCGAGACCATCTTCTTCAAAGTGCCTGAGCTCTACGAGATCCACAAGGACTTCTACGACGGGCTCCTGCCCCGCGTGCAGCAGTGGAGCCGCCAGCAGCGCGTGGGCGACCTCTTCCAGAAGCTG
Seq A exon
GTGAGGAACCCGGGGGCCTCGGGGGTGACGGGGTGGAGGGCGGCGGGGCCCAGCCTCTCCCTGAGCCTGACGCCCACCCCCTGCCAGAGGCGTGGTGGGGAGGGGGAGTCCAGGCGCATCTTAGGCCCCAGACGCCCAGGGCGGGCCGCGCGGAGTGGGCGCTGTGCAGCAAACCCCAGGCGAGGACGCCAAGCCAGGTTCTCTCCCCGTGGCCCACCCCGCGTACATCTCTGGTCCTTTCCGGCTCCGCCCGAGTTCCGCTCAGGGTTCCCAGGCTCCAGACGGGGCCCTCTTTGGACCACAAAGAGGCTGCGGACCGGGCAGCAAGACTGAGGTTACGGGCACGGGGCGGGGAGCCGGGAGCCGCCCCTGCAGGTGGGACAGCGGGGCTCCTCGAGCTTCGTTGCGTGTCTGCACTTCTCTTGAGTTAAAGGGTTAGTCAAGGATTTCTTAAAGAACGAGAGAAAGGCAGTTTGGGGAGGGAAGGTTGGTCATGGGCGAGGAGCCCTCTGGTCCCCAGGGGAGTCCCTGACTGAGGACGTGGTGAGGACAGAGCTCCTGTGTGGCCACAGCTCCCGTGGCAGCCGTTTTAGGACCTGGAGCCGTATTTACCGTTAGGGACGGTGGTCGCAGCGCCCTGGAGACGCGGCACATCCCGTGGACGGGGTGGGGAGGCAGCAGGGCTGGTTTGTGTGTGGCCAGCCCGGCAGAGAGGCGGCCTCCCAGCGCTGCGAGTCCTCGCCCCGGGACTCCTCGAAGGCAGGTGCCGGGCCGGCCCGTGTGACCAGAGTTCCCCCTGCAGGGACCTGAAATCCCAGCTCCCGGGTTGCCCGGCCCCCTGTATGCGTGCCCTTTCCCTGAGAGGGCACCCGGCCTTGTGGGCTGGGGCGGCTGAGGTCGCTGGGCCCCCTTCTAAGTGCCCAGAGCGCACGGAGACCAAGCACCAGTCCCCGGCCCTCCTGGGCCGCCCGGACGCCCAGCTGGCCTGCCTCAGCTCATGCCAGACCCTGGCGTTCTGCTCGGGCGTGGCTTTCCTGTGAGCTGTTCCCTCCCTCCACTGCTCGGGGCTTCAGGAAGGGGAGGAACGCTTCTTTGGTTCAGATTTCCCCGCCTGGGACCCCTTTCCCAGGGCCAGAGAGCAGGGAGACCGGTACTGCCCATCCTCAAAACCCCCATCTTTGAAGACCCAGGTTGTGGGCAGAAACCGCAACCACTCTCTTCCCCAAATAACACTTAAGTCACCCAGAAACTTAAAAAAGTTTAATAGTCTGACAAACACGGGAATTTGCAGCATTTGCTCTGGTCTCCCTGGTGTCCTGGAGCTACCTTCGTGCATGAGGTGCTGCAACAGGCAGACAGGGAAGGCGCGGCCCTACGGAAGAGGAGCCGCCATGGGAGGTGGTTGCTGGGGAGCTCTGTGCCGTGTGTTCACCTGTGTGCCCCCGGGGCCGGGCGCTGGGCATCCCCACAGACAGGTGGACGGGTCCCCGTCCCCACAGCTTTCAGATTAGCACAGTGGGGTTGGGCTCCCCAGCTGGGAGGGTCTCGGGACCCCCCCAGGAGCCCACAATGCCCCAGCCCTGGTACCACCGCTCCCCAGGAACTCAGGAGCCACGCCTCGTTGCTGGGAAGCCCCTTCCTGCCGCTGCCTTGACTCCCTTCCTGTGGGTTAATCACTACCCAACTGGGGCTTTGTTTCTGGCTGAATTTTTATTAGCTCAGTTTTTTTGGTTCCTAATCACTTCAAACTTCCTGAATTGTTGCAAGAATCGCACAAAGAAGTCTCTGTGCCGGCTGCACCACTTGTAACATTTTGCTTTATCTTTCTTTCTCTTTTGCTTTATCTTTCTCTTTTTCCCTCTCCTTTGTACACACACACACACACACACACACACACACACACACGGTGAATAGTTTGAGAGAAAAGTGCTGATCCTGCCTTCTATCTCTAAGTACATCATCGTGTATTTGCTGAGGACATGCTCCTCCACAGCCCACAGGACAGTGCTCCATCAGGGGCGGCTCATGCTGATGTGGTACTGCTAATTAATACGCGATCCTACGGATCTCTTCCAGGTTAGGTGCCCTGTTCTTTGTGGCCGTTTTCCTCTGAGTCCGGATGTGGTCGTCAGGTCTCTGTAGTTTCTTACCATCTGCACCGCTTGCTTGACCTGTGCTGGTCTCCCACAACCTTGACATTTTTCTTAAGGGTACACCAGTTTGGGTTGGATTTTTTTCCAGAAGAGATTCAGGTTCTGTGTTTAACCACTGTGTCCTGTTGGGGCCTCACATGGTGCACGGCGGGCACCTGGTCTCCATCTGTCCAGTTACCCGTGCAGCTCGGGTTCTGATTGGTGCTCCTGGTCTCCATCTGTCCAGTTACCCATGTGGCTCACGTTCTGATTGGTGCACCTGGTTACATGCAGCTCAGGTTTTGATTGGTGCACCTGATCTCCATCTGTCTGGTTATCCGTGCAGCTCGGATTCTGATTGGTGCATGAGTTGCCTAAACCTCTCTAAAGCCACGTGGGAGATGTGAGCTCCTGGAAGAGCAGGCAGAAGTAACCAACAAGCGGTTCTGTGTTGATGTATTTAGGCTGCTACCGCCCAGGCGGTTCAAACAACAGAGGTCTATCTCCTCCCATTTCTGGAGGCTGGTAGTCAGATCCAGGCGCTGGCAGGGCTGGTTTCTCCCACGGCCTCTCCTCGATGTGTCAATGGCTGTTATTTCCCTGTGTCCTCACGTGGTCGTCCCGCTGTTCCTGTGTCCTAATCTTTTCTTCGCCTAAAGACCCTTGTCAGATTGGATCAGGCCCATTCGAACAGCCTCATGGTGTTTAAAACATTGTTTTTGATGTGGACCGTTCTTACATTCTTTATGGAATTTGTTACACTCCTGCTTTTATGTTTTGGGTTTTTGGCCTCGAGGCACGTAGGATCTTGGCTCCCTGACCAGAGGGTGAACCGTCTGCCCTGGAAGGTGAAGTTTTAACCACTGGACCACCCGGGAAGTCCCGTGACGGCGTCATTTTCTCCCCATCACCTCTTTAGGCCCATCTCCAGCTACAGTCACTTTCTCCGTGCTCAGGACTTCGACTTACGGATTCCAAGGGGACACACTTCAGTAGTAACATCCCCTCGGGACTAGGCTGAGCCGTGGCCTCTTCCAGAGGTCACCCCGGCCACAGTATCTACTGTAGCCCTGCTCTTCTCCCCTGCTCTGCCTTCAGCCACCTGTCATTACGCGTTTCTTTACTTATTTATCGTGTGCTCTGCTAGCTGGCCACACGCACTGTCTGAATGATTGGTGGTGACAGTGCCTGAAGCAGGGCCTTTGTTTGGGTGGGAGACCCTCAGTGAGCGGGGCAGTCGGGGGAGAAAGGGCTCTGGGTCCCACCGTGTGACAGGGGACCTGGGGTCTTGGACGCGGCGACTTGTCCAGGTGAACGCTGTGGCCAGGGCCGAGCGGGGCCTCCTCCAGCTGCTGTTTTTCTCACGTGCCCCCAGACCCTCGGTGCAACCCCCACAGGGAGCGGGGTCAGAAGATCAGTGCGGAGGGCATCTGGCCTTGCCATCTGAAGAAACCTAAAATTCAATACAAATGCAAATGCACGTAGAAATAAAATTTAGGTTCGATGCAGAGCAAACGCCAGGATCAGCAGAAGCCTTGGGCCTCCGGCTCCCGGTGGGCTGCAGTGGAGGAGACCCACCCAGCCGGTCACGGGGTCTGCCCTCACCTGCTCAGGCTGGACTTTCCCTCCTGCCTCTGGAGGTGACCCAGGCCCTGGTGATGGTGGTGGCCGCAGACAAACCTGCCCCGACCTTGGAAGTCTTGACTCAGCTGAGAGCTGGGGCAGGAGACCTCCTGTTAACGCCTTTGGCCGAGAGCAGGACAGCGCCCCTGCTTTGCAGCTGGCAGCGGAGGCTTCCCGCCTGCCAGGGTGCCGAGTGACACCTCAGCCCCGTCGCAGGTCTGGATGGAGCTCATAACTGGGCAGTGGGAGCCCGTCTTCTCCGTGGGCAGCTAAACTGCGCATTTCTCACATGTCTGAAGAGGTTGTAGAGGAGCAGAGCTGTGTAGCCCCTCCTTGCTGGTTGGATCTCCCTGCAGTCCAAGGGACCCTCAGGAGTCTTCTCCAGCACCACGGTTCGAAAGCATCAATTCTTTGGTGCTCAGCCTTCTTTATGACCCAAGGAGATCAAACCAGTCAATCCTAAAGGAAATTAACTCTGAATATTCATTGGAAGGACTGATGCTGAAGCTGAAGCTCAAATACTCTAGCCACCTGATGAGAAAAGCTGACTCATTGGAAAAGACCCTGATGCTGGGAAAGATTGAAGGTGGGAGGAGAAGGGGACGACAGAGGATGAGGTGGTTGGATGGCATCACCGACTTAATGGACATGAGTTTGAGCAAACTCCAGGAGTTGGTGATGGACAGGGAGGCCTGGCATGCTGCAGTCCATGGGGTCGCAAAGAGTCGGACACAACTGAGCGACTGAACGGCAGCAGCAGCAGTGCAGCCCGTCGGGCCAGGGATGGGTCCCGCCGAGGCGTCTGCAGCTGGGACGAGCAGGGGCCGCCCCCTCCCACCTGCTGGAGACGCTCATCTTTGTTCACTGACATCCTGGAACACCAGCCGTTTGCTGGTGGCCCAGTTTTAAACGAACAGGGTGGGAGGAGGAGGTTGCTGGGAAGAGAGCCCCTACCTGCCTGGGGCTGTGAGTCACCTCCCCACATGTCACATTGGAAGCAGAAGTGCGCTCAGCGCGTGGGTAGGGGAAGCAGGTGGGCGGCGGTGAGCGAGCGGGGAGCTGAGGTCGCTGCAGCCCCGCACCAGCTGCTGCACCTGGGCTTAGGGGAGCCCAGCACTGAGGGTCGGAGACCACCTGCCCCGCTCCTGCCCGGCACCCGTCCCACTGTCTCTCCCTTCCTCCCCGCAG
Seq C2 exon
GCCAGCCAGCTGGGTGTGTACCGGGCCTTTGTGGACAACTATGAAGTTGCCATGGAAACAGCCGAGAAGTGCTGTCAAGCCAATGCTCAGTTTGCAGAAATCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020566:ENSBTAT00000029392:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.065 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(32.3=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(18.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development