RnoINT0025282 @ rn6
Intron Retention
Gene
ENSRNOG00000001304 | Bcr
Description
BCR, RhoGEF and GTPase activating protein [Source:RGD Symbol;Acc:1307993]
Coordinates
chr20:14469328-14473618:-
Coord C1 exon
chr20:14473433-14473618
Coord A exon
chr20:14469436-14473432
Coord C2 exon
chr20:14469328-14469435
Length
3997 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CTCCTCCTTCCACCCTGCAGGCC
3' ss Score
10.25
Exon sequences
Seq C1 exon
CCCATGAAGCCTCTGAAAGCCGCTGCCACCACGTCTCAGCCTGTGCTGACCAGCCAGCAGATTGAGACCATTTTCTTCAAAGTGCCTGAGCTCTACGAGATCCACAAGGAGTTCTATGACGGGCTCTTTCCCCGCGTACAACAGTGGAGCCACCAGCAGCGCGTGGGTGACCTCTTCCAGAAGCTG
Seq A exon
GTGAGTCAGTTGGGTACGCTGGCACTTGCGGCTTTGGGGACGAGGTTTGTCCCTTGGACATGTGTCCCAGGGAGACATCCAGGAGACAGTGGGAAGGAGAGCCTGGGGTGTATCTGTAGCTTTGGTGCCAAAGGGCAGGCCGCTGGGAGGGAGAGGTGCAGGGACACATGGCCAGCCCAGCTGAAGTCCAGCGAGTGCGTTGACCTGATCTCGGCTCCCTACTGTTTTTTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTGTTTGTTTGTGGGTTTTTGTTTTTTTTTTTTTTTTTTTTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCACTGAACTAAATCCCCAACCCCGGCTCCCTACTGTTTTGCTTGGGGTTTCCAGGCTTCATGCGGATCAAGATGTGTTTGAGACTAAAATGTTTTTTTGCCACCCAGCACAGCCAGTCTTGGGCTCTCAGTGGAGAACGGCGTTTTGCTTGGAGAGCTGGCTACACGTGACAGCACACTGGGGCTTGGTTACAGGTCAGCCCCTGTGTCTGCAGGTCTCCCCCTCTGCACCCTGGACTCTCCCAGTGCCGAGATAGAGTTGTGCATGTGCTGCGTGTGTGCAGTCTTTACTTTGGCATCATCACCCCCCTACCCCCCAAACAATACAGCACAACAGCTATTTACATGGTGGTTACCATGGATTAGGCCTAGAGGTGATTGGGAGCATGTGAGTCCGGGTCTGAGGCACGTACGTGTCGTTTCAGCCGTTTGGGAAGCTGAAGCAATAAGGTTGTTTGGGCCCAGGAGTTTAGGGGTCCAACCTGGCCAAAATGGTAAATAGAGGAAGAAGAGAGGGAGTGTGTGCCTAGCTAGAAGCCTCCACAGAGAGGCTTGGATCAGGTGACAGCTCTCTACAGAGTTGGGTCCCACTGTGACATCAAAGGGCACCATGTTACCTGCATTGAGGTCGCCCCATAAAGCAGGTCCTGTTTTCAAAGAGACTGAGCAAGGAAGACTGAGTGAGTCCCGTGTTTTTATTTGCCGTAAAAGAGTACATCTGCCGGCCATGAGGGGCCATCAAACCAGAGGACAAGAGGAGGTAAACAACAGATTAGGGTTTCTGGAAGTCCTCAGTAGATCAGAACTGACCAGGAAACTGACAGGTGCCCGGGGGAGACGTTAGTACAGGGTAGGAACAGGAAAGGAGGGGTTCCTGACAGAACTGCCCAGCAGAGAGGTTACCCCTCCTAGCGCTAGCCCTGGTCTCTTTCTAATGATGGCTGATCCTAATTCCTAGATTGGTCGTGCTTCTGACACACACACACACTTTGCTTGGGACCTTCTCCCCATGCAGAAAATAGTTCTTCAGGCTTAACAGTGGTCCAAGGGCAGGGTTCCTGAAAATGACCCATAGCCACACACCTTATTGGGTGCCATGCACCCAGAATTCTGTGACAGAACTTTTCCTGGACACACACACATACACCCTACTCACCCCATTTGCCTCAGTTGTGCCAGACAGGGATCCCACGACAAACCAAAGTATAGATAGCACCAAAGTCCAACTTGATGAACCAGTGAGTTTTATTGGAGTGACAGAGTCTGGATGAGGAGCACAAATGACTCACTGTCAGCTACATCACCAAAGCCAGCCCAGCACAGGTGACAGCCCACAAAAGCTGAGAACCTGGAACACACTGAGAGTGTTCTGAGAGTGTCCTTTTAGGGTGCCTCAGTTGCTCTAAACCTCTTGCAGGCAGCTTGACTGGTTTCTGACTTTTCCAGGCAGCTGATCTGGGTCTGCTCTCAGTCTTTGCTTGTCTGAGAGAAGCTCAGCTCTTATTGTTTACTTTGGCAAAAGAGGGGGGGGGGGGGGGGGGTTTGTGTTAGTGAATCTGGTCAGTTTCAGGGACTTCCTGAATCTGTTTTGAGTTGTTTACCTTCCTACTCCAGGAGCTTTGTGCAGAATGGGATGTTTTAATCTTGAGAAAAGGGTTATGCAGGAGGAGCCCAGTGGCCCCAGTTCAGGGTGAGGCTTTCCTCTTGGCTCTTGGCTCTTTTCCCTTTCTCTTCCAGCCCTGTGTCAATAAGATTAAACCTTGAAGAACAGACTCATCCTGAAGCCTTCAGAAAAGCAAAGAATAGTGTTGGGACAGGATAGGGGGTTGGGGCACACCCAGCACTTACCCAGAATGAAACCACTCAGGGGACTTTTCTCTTTCCCAGTCTTCTAAAACTAAGGAATGCTGGAACTTAAGTTTTAGAATGTTACTTTTGGTTGGTGTGTTGCTCTTCAGCTGTCCCTCTGCAAGGGAGAGCTGTTGCCCAGGCCATCTGATGAGCACCCCATGTGTCTTTAACTCGGGCTGAATGCTGAGGGCTTCCCAGGACAGATAGACAGTCCTACACTCCACCCTTTCAGTCTGCAGCAAGGCTAGCCCAGCATCCCCTCCAGGAGTCCTAAGACTATCCCGACTTTGGCGCCTTCTCTAGAGCCCTGGACTCCTGAGTTACCGCCACGGTGCCCCTTTCCTGTACTTGACTCTCAGCGAATGAGGTCTTGTTCGTGGTTAAAATCCTTTCCCCCAGTCCCTGTCTGATTCAGGATCCAACCCTGTCCAGTGTTATGTGCGTTTGGTTATGATGTCTCTTTAGGCTCCTACTGTTTGTGTCAGCTCCCTGAACTGACGTTCTCCGAAGGGCACAGGCTGCTCTGAGTCTGTCAGACGTTTCCTCAGGTCTCTTTGGTAAAGAATGACCACAGTAGGGATTCTGGCCCGTCCCTAGGCATACTAACGAGATACTGCCGATCTCCCGTTTATGCCGTTATCATTCAGCTCCGGTTTCCAATTGCCAAATACATAAGAGTTAATTTTTTAGTATTTCTCGTGCCTGGAAAGAAGTGAGCTCTTAGGCAAGAGAAAAGAAAAGTCATGCAAGTGGTCCTGGGCTGAAATGCTCTGGACTCCACACCGAGAGGCCGTCACGACCCCTCAGGCAGCCGGGAGGCCCTCACTCAGTGGCCTGCAAAAGGGAAGACAGGGTGGATGCAGGAGTATTCCGAGTCTTAATGGTTGTGGTTTGTTCAGCGAAGGAAGGTCTGGAATTTAAGCTCGCAGCAACTTCTCTGAGAAAACCCATATAAATGCAAATGCTCACGGAGGTGAAATGTATGCTCAACTTAGAGAACTCCGGGAACAGCTAGTGCACCAGGCTTCTAGCCCCCAGGTGGCTGCCGTGAGAGGCTCAGACCTAGCCAGCATGTCCGTCCGCTCTGTCTGCAAGCTGTTGCTTGTGAAGACTAGGCTTTTTTTTTCCTCACTGCCCCCAAATGATGTGAGACCCAGAGATGATTGTGGTGGTGCCACATACCCTTCCACCTACCCATGGAAACTGCTTAGTTGAGTGTGTATCGGAACAGGAGCTCAGTGAGGGAAACCTCAAAGCAATCCCCTTCCACCTGCCGGGTCTGTAAGAGCCACGTCCCCCCACTGTGAGGTTTAGGACGGGCAGCCAACTGTAAGAGCTTCCCTTTCCAGTCAGCCAGACCATGTGTTCCTCACCTGCCTGACAGGATCCGATGTGAACACAGCACCGTGGTTACCAGGATCCGTGGATCATGGTCACGGCGGCCCCCTCCCTGTCACCTGCATGGGAGAATTCATCTGGATTCTCACCTCGAGCACAGCATCTTTTATGCAAGCAGAGTGGGAGGAATAAGGAAGGAGCTCTAAAGGGGGCCATTACCTGTCCAGGGCTCTGACTCACTTCTCAACCTGTCACTTCAGGGGAGGGAATCGTGCTTGGTATGTGGGGAGGCGAAGCAGGTGGGAGGAAGCTGCACAGAAGAGCAGGTTTCTGCAGCCCGCGTGCCGTAGCTGGGTCTTTTCCAGAGCTATGCACAAGAACCCAGTCCTCAGAAAGATGGGGAATGGCTACCTATCCCACCCCATCTCACCCGCTCCTCCTTCCACCCTGCAG
Seq C2 exon
GCCAGCCAGCTGGGCGTGTACCGGGCCTTTGTGGATAACTACGGAGTGGCCATGGAAACTGCAGAGAAGTGCTGTCAGGCCAACGCTCAGTTTGCAGAAATCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001304:ENSRNOT00000001766:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(32.3=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(18.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]