GgaINT0008623 @ galGal3
Intron Retention
Gene
ENSGALG00000006695 | BCR
Description
NA
Coordinates
chr15:8867815-8871758:-
Coord C1 exon
chr15:8871573-8871758
Coord A exon
chr15:8867923-8871572
Coord C2 exon
chr15:8867815-8867922
Length
3650 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTTTGTTTTGCTTCCTGCAGGCC
3' ss Score
11.26
Exon sequences
Seq C1 exon
CCTATGAAGCCTTTGAAAGCAGCTGCCACCACCTCTCAGCCTGTGCTGACTAGTCAGCAGATTGAGACAATATTCTTCAAAGTGCCTGAGCTGTACGAGATCCACAAAGAATTCTATGATGGACTCTTTCCCCGAGTGCAGCAGTGGAGTCACCAGCAACGTGTCGGAGACCTCTTCCAAAAGCTG
Seq A exon
GTGAGTTGGCTGCAGTCACCAAAGCTTCTCTTACCTCTCATTCATCTCATGTGTGCTGCTACAGCTTCTTCTGGTGACTTTGCGTGGACTAAAGGGATGGAAACCTGTCCCTGGAGTGAATGACAGGTTTCTAGCTTTGCCTCACTGTGGAAAAAGTGGCTCTCATTGCTGTTAATTACAGACTCCAACAAGCTACGATACTAATACAAATACAGCTCTACAGAAATGTTGAATCTCCAGGCTGTTTGCAGTGTCATCAAACCATTTACTGTACAGGAAGATTGAAGAATGGCAGTGTTTGTTCTCTTTTTTTTTTTTTTTTTTAAAGTCTTATAACACCAAAAGATAAGTATTTCTCTTATTGCTGAGCTCTCTCACATGTATTTCCCTTTTCTCTGTGGTGCTTTGCTCTACATTGAGCTGTTTTTTTTATGGTGGTTGCCTTTAGCTTTGCTTTTCTAGCACTGTAGTGGCCTTGATATTCCCCTTGCAGTTGAGATGATGCAGTCAGTCTGATACTGAGACTTCTCCAAGCAGTCTCAACAAAAGTCTCTGAGTGCAGAACAGGCCAAAGTCATGTAAAGCATATTCCTAAGGCTGATTTAAAATTGCTGAGTTTCTGAGTCAGATGAAAAATTGTTTGCGTTCTAGGAGATTCCTTTGGCCTCTTTTGCCTCTCCCCAAGCGCATGCAGAGAGCAAAGGATTAAAAGGCCTGTTTTTTCCTTTTAGAAAAGAAAAGAATCTCTGCATTCCTGAGGTGCTTCTGATTCTCAGGGTAGGAGTGACATTCCAGTGAGGGGTTTATTGGATGGAGAGTGCTCTTTACCAGGGTCACTCAATTGTTAGCAGCTGTGTAGCCCAGTACCAGCACCATTGCCTGCGGAGCAGGGGGAGAAGGGCCTGGAAGGGGATGTTTTCCATGCATGCTGGCAGCTCAAGATGAAAATATGGGAATCTGCTTTTCACTGCTAGCATGTTTTAGCCAGAAGGGGTCAATGGCCAGTAGCTCTGCATATGCAATTTAGGCATCCAGTTTAAGAAGACAAAGCCAATTGCTTCTGGTTGCTGACGCAAAGATATACATAGGTTGTTCTGAAAGTAATGCCTCCAGTTTATTTCCATGGAAACTACTGTTCCATATGCACTGCCATGTCAGATGCCTTTCTGTCAGAGTGCCCCTCTGCTGTTATCTGTTGCACAGCAACAACGTGTAACAGAATATTGGTGGGAAGGTTCAACCTCTACAGCTATTTAGGCCTTTGTTTAAGACTGTTTCTTGCTGGTGGTGGTTACAGGCCCTTCTGTGGTATTCTCATTTTTATATTCCCTTGATTCTTGTGAGTTTGTAACAGAATTGGTGGTTTTGTTGGGTTAGTATTGGAAGCAAAGAAACAAATTGACCTAATGCGGGCAACTGAGCTAGCTTAGTGGTTTTGAATTCTGATGGTTTGGTACAGAGTCAGTGGGAATTGTGAACTCTTTGCTGGATGAAGTAAAGCTCATCATTTTTGGCAGATGGGAGAGACAGCAAGATCATCGGGCATTAGAAGATATCTTTACAGGATATACATCAAATCTATTGGAATAGATTGTTTAGTTGCGGTTGTGTTATGCAATTTGTTGATAAAGGCTGGAATCCTCGCTATTATCCTGAGGTCTCTGTGAACATAAATTTCCTTTAACATCTTTTAAAACAAAGCAATGTAGATTGAAGTTAGTGCATGTCATGAGTTCTAGAATTTCATGTGGTCTGGCACAAATTATCACCCATTTGCGATGTCAGTGGATGTTCCACCTTTTTCACAGAATTACAGGATGGTTGAGGTCAGAAGAGACCTCTGGAGGTCATTGGTTCCAACCTCCCTGCTCAAGGAAGGCCAGCAAAGCTGCCCAGAGCAGACTGCCAAGGACTGTGTCCAAGAGGCTTTGGAATACCTCCAAGGATGGATGCAGTACAACCTCTGTGGGCATCTTGTTCTAGTGCTCAGTCACCTGCACAGTAAAGAAGTGCTTCCTGATACTCAGGCAGAACCTCTCGTGTTCCACTTAGTGCCCATTGCCTCTTGTCCTGTCACTGGATGAGTTTTCCTGTTGAAACTATGGAAAAGAGAGGGGAAAGAAAACAACATCAACAACGAAAACCATCAAGAATGTGGGGGAGAAATGTGCTTCTCATGTTTGTGGAATATTTTGTACAATTTTTGGAAATAAGTATTTAACAAATATTCTCTCTAATAGTTTACAAGAATGGAAAACGTTTCACCAAAAACCAATTAGTTTTACCAAAGTTTATTTACTTTTCATTATGCTCTTTTTAATTGAAAAAGGAAAAACTCAAACTAGCATGAAAATTTGGGGAGCATTATTGCTTTGATTGGAAGATCAGTTTTTAATAGAAAACATGTTTTAATGGCAGCATCTGTAGGGAAGAAAAACAAAGCTTATAGAGCCTGTTCAGGAGTAGCAGGAAATGAATGAGCCACACAATAATGGAGAAACTCTAAAGCTCCTAAAGTACCTAGTCGTTCAGTGAAATTTGCCATAGAAAATAGTTTCTGTTAGCTAAAGCTAACGTTTGGTGCAGCAAATGTTTTCTAGACAGTGCTTTTTTCTCATCCATCGTCTCTTGCATAAAGGTCCAGAGAGAATGGAGAACATTGGTTATGGGAGAGCCAGAGAGGAAAGGAGCACTGTCGGTGATGAACTTCACTGCTCTGCCTGTTGTTTGCCTTTTGGGCAAAGGTGTCAGGGGAGGTGCAGAAGTGATAGGGTAAATGCAAGCTTTTCTGGTAGCAAGCTTCTTTTAAATGGAGGCTTTTACAGCACTACACCTATTGGCTCACTACTGACCAGGCATTTGAAAGCACATTCAAGCTGCTGAGGTGTTTACAGCACAGCCTGTGCAGCTCCACAGCATAAAAACTGCTCTGCGATCCAGACAAGCTTGGAAGCTACCCAGGGATTTCCTGAGCTGGATCTTTTGTTCTCTGGCACAAATAGGCTGCAGTTAATAAGTCAGAAAATGGGATCAGTGCTAAGGCTCAGTGTTGATAATGGCTCATTACTGGACTCTGCTCCATCTTCACCTGGATCTAAGTGCTGCAGTCAGTGCCTTCCAAACAGATTGTGTTCTGGGTTTCTTATACATTTTCAGCATCTTCTGTCCTTATAACAACGTTTGCTGATGCATGTATAGTTTAATATCTGGGCTTGTTTTAGTGTGACCAGCATGTGTGCAAAAGCCCCAGCTAGTAGCTTACTGGGGTCACATTTGTGCTGTTTGGCTGAATCATTCCTGTCTGATTCATGTTTTGTGGCAAACATCCAGCAGTTCCAGTTACATCAATGAGCTAAAATATTAATAGATAATAATCTGGCAGTTCAGAAGGGAAAAATAGATGGCAGTAATAAAGATGTGTCATCCTCACAGACCAGTAAGTGAATCTGTTCAGGATATTTGGAGTTGGGTACATGGAAGGCCTGCCCTGGTTAAGATTTTAACAGGTTAGAGATGTCTTTCTGAGCCTGCTCGTTATTCCCTGTAATTCTTTGTTGTGGAGGAACAGGACCTGACCATTAGATACTCACTCTGGCCATCCCAAACTCGTCTTCCTCAGCATTTATTTGATTTTGTTTTGCTTCCTGCAG
Seq C2 exon
GCCAGCCAGCTGGGAGTGTACCGGGCCTTTGTGGATAACTATGAAGTTGCTATGGAGACAGCAGAGAAATGCTGCCAAGCCAATGCTCAGTTTGCTGAAATCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695:ENSGALT00000010819:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.043 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(32.3=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(18.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]