DreINT0037263 @ danRer10
Intron Retention
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17142506-17150016:+
Coord C1 exon
chr21:17142506-17142691
Coord A exon
chr21:17142692-17149908
Coord C2 exon
chr21:17149909-17150016
Length
7217 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
TTGTTTTTTTCTTCCCGCAGGCT
3' ss Score
12.78
Exon sequences
Seq C1 exon
CCTATGAAGCCCCTGAAAGCAGCAGCCACCACCTCCCAGCCTGTCCTCACTGTTCAACAGATCGAAACCATCTTCTTTAAAGTGCCTGAGCTCTACGAGATCCACAAAGAATTTTACGATAGCCTTTTGCCCAGAGTGCAGCAGTGGAGTCACCACCAGCGTGTGGGAGACCTTTTCCAAAAACAA
Seq A exon
GTGAGTCTTTTTCTAAATAGCACCTTTTTCAGGTTAATCAAGGACCCTGTTTAGTTATTATTTACTTTATTTATTTACTTACTATCTTGTTTAATCATAACATCAGCTATTTCTTTCTTTCCATCAAATCACTCAACTCAATTTAGTTTTTTCTTTACAAAACAGACCTTTAATAACCCACGTTCCTTATTTATGTATAAAATCATGTAGAGTGGGGGAAATAGGTATTGAACACAATCATAATATTTCTAAAGGAGGTGTTGACATGGAATTGAATTTTGGTAAAAGCTCAAACAATACAAACATAAAAACAAAAAAATCTAAAAATAAACGAGTTATGTTTAATAACAATGGAATGACTCAAGGAGAAAGTAATGAACTACTAAAATGTATTTAATACTTTATATAAAAAGCCTGCTTGGTGATGGCAGCTTAAAGACGCCCCTCATATAGAGAATGAGGTTTCATGCATCACTCAGGTGGGATTTTTTTTCAACAGTGTAAAAATCTTGATGCTTTTGTGGGTCTCGTCTATCAAATCTGATCTTTATTTTGTAATGTCTATTGGATTCAAGTCAGGTGATTGGCTAGACCATTCTACAGCTTGATTTTCTTTCTCTGAACGCATTTGAGAGTTTCCTTTGCTGTGTTTTGGATCATCGTCTTGCTGAAATGTCCACCCTGGTTTCATCTTCATCATCCTGGTAATGTAGATGTCGGACTGAAGCAGCTAATATTAATTTACACTAAAGAAAGGCAGAGGGTTTCTGAAGAACTACTAAGAGGTTATAGCTGCTGTCTGGGCTTTCACTGCCTTTCTACACCTCCCTTCATGTGTTCAATACTTTTTCCCTGTTTCATTTCAATTTATTTTATAACTTGATTTGTAAACTAATTTGATTTGTTTTCTTTGCATATGGATTTCTTTGGTTGTTACCAACATCTGGTAAAAAAAATTCAAAACAAAAGCACATTTAGAAATATGTTTTGTGAGGAAAATGGTACTGTGTTCAATACTTATGTCGATCACATTCTAGAATACATCCTGTTTCACTCAGAAGTTTTATTAGTGGGCATCAAATAGCATTTCACACACAGTTTTCAATATATTTTCACAATAATCAGCTCTTCGTATGCTGTCATGGTTGGTTTTAGAATCAAGAATGTGATTGAGAGTCAAGTATTTAATTTTGATCATATTGAATTCGCTGTACATTCCTTTTAGTACACCGTGAGGCTGAACAAGAATTAACATTTAGCTCTAAATCAAGGAATCCTAAATGAATCATTCATGCCCCTAGAATGACACTGCACAGTCACACAATGTCTGGACTGCAGGAGCCTGTGTAACGTTGAAAATCAGATCTCAATGCTGTCTTTTTTTTTCACCCAGTCACTTGGGCAGATACTACAGCGTGTGCTTTGTGTCTCGAGGAGCAGGCTATTAATAGTGCCATTTGAAGATTGTGTTCTCTATCTCTGGCCCCCTCCTGCTCTTTTCCATTAAGTTTTGTCCTCACGTGACTCAGCTGACTATTAGAGGGCAGATAAATCCCCATTTTGTCCGGACAGCCTGTGTGGGAGTCATATTCCACATTTATTTATCTTTCCATTTTCTCCTTCATTATCCCCTCCCGTGTTTATTAAACAAAAGTCAGAGTCGCCAAGTGGTGTTTTCTCCCAGAAGATGCTGGGTTTTCCTCAGACAGTCATTTTGACCGGAGGCTATTTGTCACTGATCTCCTCATTCTTCCCCATGTCCATTAACGACAATCCAAGGCGGCGCCTGAGGAGGCAGACTTCCTAAAAAAGACAGTCGCTCACAGCGGGAGAGAGAACAAAACGAATGAATGAGATAGATATAGTCACAGTCACTGACAGAAATGCCTCCTGCTGTTTGTGTTGTTTGTTCCTTCACGACAGCTCAGGTTGAGTAAGAAAACGCAATGCAAATCACTATGTATGTTGTTATTTAGCACGAATGTCAAAAGGGATGTTCGTTGTTCCACTCAGCTATGAGGAAGATGCTAATACTCTCGCTCCCTCACACTAAATGTTTTTACGCCTGTCACCGACACTCGAATGTAAATTCTCTGCAGACTCTTCTCCGAATAGAGAGAGATTCTGACATTCCCATCTTTTTCTATGCAGATCTGTGACCTACTTAAACATCGTTAAGTGCACAGAGCAGAGGAACGTACTTTCATCTTCAGCTGGGTCTGGCATATGGTCATGTCATCATGAGGAAGTGTGTCGAGCCTGAGTGGATGTGAACACTGCTGTGCTGAAGTCTCTGTCAAGCTGTCCGAACCAGCTGACGTATCGACTTTTTAGTTTGCGTGTCGTATTTAGATGCATCTCAACCTTCTCAAAACAGTTGTGGCAGACAACATCTCGATGCTTACATGTTATCTGAATGAGGAATATCGACCTGTCAACATGGTGTCTGCGACAACATTTATTGAGTAGACAGACTAGTGTGTTTTGTTGTGGATTGAGGTGTCATACTATCAGGAGATCAATTATTAATATGGCCAAAATAATTTATGATAACAGATTTGTGACAATAGTTTTAGAAATTTGAATTTAATAATCTAATAATAAGTTATCAGGGATGGCATGGTGGCCTGGGGGTAGCATGGTTGCCCCACCGTTTGAGTCCAAGTTGGTGCAGAAGTTCTTTCTGTGTGGAGTTTGCATGTTCTCTCTGTGTCTGCATGGGAAATAGGTTAATTGGATATACTGAATTGACCATAGTGTGTGACTGAAAGCGTGTGTGGGTGTTTCCCACACACTCTCACCAAAGGTTGTACTCTCTTTTCTGCTGGGTTGCGGAATAGGCTGTAGAATACACATTACTTGTTTTGTGTGAAGAAACAGAGAAAAGAGTTATGGTCAATATAGTCATTCTAGTGAAGGAAGCCCCGCCTTTTAGCAAAGGAGCCAATCATTGTTCACAGTAGACGATTTGTCTGGAGGAGGAGTTTAGCCCAAATGTGTATTCTTCACGACAGTTAATGCAGTTGTAATGAAGCCTCTGGTTTCTGGTGCTGGATTATTTCTAATATTGTTATGGGTGTAATATTAACACCATATCAATAAGCCATCCAAATCTGTAGATCCATCCATCCATGTAGTCATCCATTGATTCCCCCATCTATTTTACTATCTATCTGTCCATTCATTTTCCATTTATTAATAAACACTTTTATTCACACAATTAAATTAACCTTTTCATCCTTTCATCATTCATATGTCCATCCAACTATCAGTCCATCCATTATTTTCTTAGTTTTTCCACCTATCCATCCCTCTAATGGTCCATCTGTCCATTTAGTCATCTATCTTTTAACCAGTTTTTTTCATCCATCCATCAATCAATTCATCCATCCATCCATCCATCCATCCATCCATCCATCATCCATCCATTCAATCAACCATCCATCACACTATCCATCTATTTTTTTATCCTTACGTCTATCGGTCCAACCATTTATTTATCCGTTCACCCATCTATATATTTGTCTGTTTCATCCATCCATCAATCCATCCATCCATCCATCCATCCATCCATCAATTCCCCCATCCGTACATCTATCTTTCATTTATTTTTTCCATCTATTCATAAATACCTCCATTCACCCAATTAAATTATAATTTCATCTGTCAAATTATCCATCCAACCATCATTCCATCCCTCTGTTACTTAATTTTTCCATTTATCCATCTCTCCAATGGTCCATCCATTCATTCAGTCATCCTTTCAGCCATCTTAACTGTTCATCAGTTTTATTGATCCATTCTTCTATCTGTTAATCTGCTGTCTTAAATCTATTCATCTTTTTATCAGCTTTGTTTATCCATTCACCTATCCATTCAATCAACCCTCCATCACTCCATCCATCTGTCTCTTAGACCTTTCATCAATCGGTCCATCTATTTATTCACCCTTTTACCCATCTATTTGTTCATCTGTTTCATCCATCCATCCATGCATCTGTCTCATCCATCCATCCATCCATCCATCCGTCCAACCATCTATCCATCCATCCAACCATCCATCCATCCAACCAACCATCCATCCATCCATCCATCCATCCATCCATCTGTCCATCCATCCATCCATCCATCCATCCATCCATCCATCTATTTAATCAACCATCCATCACTCCATCCATCTATCTCTTAATACTTTCATCTATTGGTCCATCCATTTATTTATCCTTTCACCTATCTGTCTGTTCTATCTTTCTGCTCATTAACTTTTCCTCCTATTCATACTTTCATTCATCCAATTCATCCTTTCATTCATCCATCCATCCGTCCATCCATCCATTTATCCATCCATCCATCCATCCATCCATCCATCCAACCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATCCATTTAATTAACCATTCATCCCTCTATTTATCTATTTTAGTCCTTCCATCTGTCAGTTCATCTATTTATTCATCCTTTCACCCATCTATCTGTTTGTCTATTTCATCCATCCATCCATCCATCCATCCATCCATCCATAAACACTGACAAACCTTATTAACTTAGCAAATTTGGCATCTACTCTGAATGAGGTCTTTTAAATCAGTTGTTTATGCATGTTTTAAACAAGTTTGATCGGAGTTGTTCCATCACTTCTGTTTATATTGCTAAATTTCCAGATTTTTGTCTCAGCTTAACGCGTCCCCTCACAGCGCTCAGCCACGGTTTGACTCGGCCCGGCTTGTGTTGTCGCTGCTTTATTACGGTCATCATCCCTCTCCACGCTGTAATGAGGTTGTCGCAGAGTAAATTCCCGTCCTCCACGCTGCAGATAGATTCTGGCCCGGGGCGGCTGTTTCTGCTCAGCATGGAGAGGATTGCACACACTGAGAAAATGACTTCACTTATGGACTCTTTGGCCTGTGCGAAATAAAAGATTTATCCCTGGACTTACCACCAAGCCTGGACGTTTACCAAAGGGGTTGCTTGGGGTGTGTGATGAGATTGATGACAAAATGTCAATGTGTCAAAACAGTGATTCAATGAAACAGTGACTCAGTAATGTCTTTCATCCAATAGTCATTGTATTGTGGTTTTTGTCATTGAAAATCAATTGTTGTGCAAAATTGTCAATCAATTGTCAATCATTGTAAAGGTTTGGATGCATTTACAAATCTCAGTCAGGAGCAAAACACCAGTATAAAGAACATCACATGAAGAATTCATCTTCAAACCAAGAATTTTTATGGCTTTATTAATTGAACTTAGTTTTTTATATGCAAATTCTCTGTGGAATGACTTTGAATCTCTTCCACAGTATTTGCAAAGCAGTAAATGTGATTCCACATCACTGACTATTTAAACCTATTTATAAATGCTTTCCTATGTCATTCCAAACCTTTCTTCTGTGTGCACATGTTTTCTCTACTTGTAGCTCTATGCATATGAGCTCAATTGTTATAACTTTGTCCACAGACATTTGCTAAAATATCATCTCTTGTGCTCCAAGAAAAAAGAAAGGTATGTAATGACATGAGCGTAACCACAAGAGAGTCGAGTGACAACGGAGTGAGGATCCTTATGCAGGTTTTTGGTTGCATGGATGGATGGATGGATGGATGGATGGTTGGACGGATGGATGGATGGATCCCAAAGCGCAAGTGTTTCGAAACACTGCATCGAAGCATGATCCGAAATAACCAGGTCACATGACTAAGGTGATTCGAAACACAAGTCTGTATAACAATAGTTATTATTTTTACAGTACTGTGATGCTTGAGTTTAGGGTTGCGGTAGACAACAATGAAATACAATAAATGGGAAATTTAATGAATAATAAAAAAATATTCTTGTTAACTTTTGACCGCAACTGTATCTGATCTAGCAACAACCTTGTTTTATGTCCAAAACAAGACATGCTTATTCACAAAGTGTTCATTTGGATGTCAGACCAATGTTAAAACAAAACATGTTACAAAAACAGAGCATTTCAAACCTAACCTCTATAGATTTATTACCCTGGGATCGAACCCATTATCTCTGCATGCTAGTCAGGAGCTCTCACAGCTTCACTAAATCACTTGAAGCTTCAACTCTACAACGTGGGGTTTAATACCTCAATTTGCTTAACTGTTTCTTTGCTGAAGCTGTTCCAGTGCAATACATAAAAGTGTATGGGTTTCAAAATGTTTTGAAGCTTTAACACATTTGGTGCGACTGTTTTCAGTGTTTCATGAAGCCTCGCTTTGCCCACCACTAACTATACCAGGGAACGCATTGTAACGTTACAGGGTGTTAACCTAACAAGTGTGTCAAAGTGAGCCGGATATACAGTATGTGAGTGTAATCAGTACATGAGTATTCAGTGTAATTAAAGGAGACTTGGAGCAGGTGTGTGTGTGTGGTGCATGACAGGACATTTAGTTCATATGGAGACAGAATTGTATTCTGTGCGATTGTAGATGTTCTACAGCGATCTATGAGGGTTAGATCACTGGTGATTGTGACAAGCGTAACGAACAGGAGGAGTAAATTGTTGGGAAACCCTTTTTAAATGTACAGTAGCAAAAGCATTTAGCTTCATAAGAGCTAAAAACATATTTGAAAATTAAATTGAGGTGTATTTACTTTTAACCTGCCAAATCCACATGATCAGTACAGACAAAATTTATTTAGGTGGCTCTGTTCCAGCTTGTTTATCATCACGCATATACACCCACACAAACCTTTTATCATCTAATGTATATTTGTGTTTGGAGAGATTGATTGAGTTGTTTGGGGAGAGAGGTTTCCAGCACTGACAGGAAGGCGATTGAGTTTGGATGGGCTAAATCAGATTTCCAAATGTGCTTTTTACAAGCGCCAGCCGCACACATTAATTGTTCACTGTAGAGTTGGCCTCTGCTGCCATGGCAACCGCTGTAGGCTCCATGGCCGTGCACAGCAATGGCCCAGCTGCTCCTGCGGTGATGACACTGTCCCGTCTGTCCACCCCATGTCAGCACGGCAGATCCATGCGTGCATCTCACTCATTACTGATAGTGTCGCTGTTAGCCAGGAGCGAGAACTGCCATCCTGGATGTACTTATAAAGCTCAACAGTTTCCATCCCACTGTTTTAAAGTCCACCAAACATGGGCTACAAATACAAAAAGATGCATAAGTGGAAATGACTCACTTTGTTTTTTTCTTCCCGCAG
Seq C2 exon
GCTAGTCAGCTTGGATTGTATAGAGCCTTTGTGGATAATTACGAACTCGCCGTGGAGACCGCAGAGAAGTGCTGTCAAGCGAACACACAGTTTGCAGAGATCTCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286:ENSDART00000101282:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0062115=RhoGEF=FE(32.3=100)
A:
NA
C2:
PF0062115=RhoGEF=FE(18.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]